Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30810 682 / 0 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G07990 529 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 523 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G02110 486 / 1e-169 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 482 / 4e-168 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 471 / 6e-164 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 456 / 2e-158 SCPL23 serine carboxypeptidase-like 23 (.1) AT2G35770 444 / 3e-153 SCPL28 serine carboxypeptidase-like 28 (.1) AT5G23210 431 / 2e-147 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 424 / 1e-144 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G041800 [exp] 565 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 563 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 508 / 2e-178 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.004G120100 [exp] 508 / 2e-178 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 504 / 9e-177 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.010G220200 [exp] 498 / 1e-174 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G105700 [exp] 494 / 5e-173 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 491 / 1e-171 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091700 [exp] 434 / 5e-149 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040387 [exp] 560 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10023505 [exp] 553 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 486 / 9e-169 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10015382 [exp] 480 / 1e-166 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10015489 [exp] 469 / 2e-162 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 468 / 5e-162 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017391 [exp] 434 / 5e-149 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 432 / 4e-148 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 395 / 1e-133 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10011213 [exp] 391 / 2e-132 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.018G103100.3 pacid=42801530 polypeptide=Potri.018G103100.3.p locus=Potri.018G103100 ID=Potri.018G103100.3.v4.1 annot-version=v4.1 ATGGCCGATCCCAGATTTCCATTTGGTTCTTTTGAATTCTCTATAGCAACTACTCTAATCATTTTCGTCAATCTCTATTTGGGTGTCTTTGCTTCGTCTT TACGAGACCCAGTTGCCCAGCAACATCTAGACAGGGTCCAAAAGTTGCCTGGCCAGAACTTCGATGTAAATTTTGCTCACTACTCTGGCTATGTCACTGT CAATGAAAAATATGGGAGGGCTCTTTTTTACTGGCTTGTTGAAGCTGTCGAGGATCCTCAATCCAAGCCTCTTCTTCTTTGGCTTAATGGAGGACCTGGA TGTTCCTCCATTGCTTATGGAATGGCAGAGGAAATAGGACCGTTTCATATTAAGCCAGATGGAAAGACCCTTTACTTGAATCCTTATTCCTGGAATCAAG TGGCCAATATTTTGTTTCTTGATTCCCCGGTTGGAGTTGGATATTCATATTCAAACACTTCTTCCGATCTGTTGAACAATGGTGACAAAAAGACCGCTGC GGACTCACTAGCTTTCTTGCTGAATTGGTTTGAACGCTTCCCCCAATACAAAGGAAGGGACTTCTACATTACAGGGGAGAGCTATGCAGGGCATTATGTT CCTCAGCTGAGTCAAGCCATTGTACGGTACAACCAAGCGACAAAGGATGAGAAAATTAATCTGAGGAGTTATATGGTTGGAAATGCACTGACTGATGATT ATCACGACCATTTGGGACTTTTCCAATTTATGTGGGCAGCTGGCTTGATTTCTGACCAAACATACAAGAAACTTAATCTTTTGTGTGATTTTGAATCATT TATCCATAGCTCAGTCGCTTGTGATAAGATGGAGGACATTGCAACCAAAGAACTTGGAAACATTGATCCATACAGCATCTTCACTCCTTCCTGCTCTGCT AATGTTAGCCAGTCTAATTTGTTGCCTAAAAGAAAGCATAGGGTTGGTCGTGTCAGTGAGAAGTATGATCCCTGTACTGAGACACATACAACTGTATATT TCAATCTACCTGAGGTTCAGAAGGCATTACATGTTTCACCAGAGTTTGCACCAGCTAGATGGGAGACCTGCAGTGAAGTGGTAAATATTAACTGGAAGGA TTCTCCTAGGACAGTGCTGGACATTTATAAAGAACTCATACATTCAGGACTTCATGTGTGGGTGTTCAGTGGTGATACAGATGCCGTTATCCCAGTTACA TCCACCCGCTACAGCATAGATGCTCTGAAACTTCCTACTGTCAAACCTTGGGGTGCCTGGTATGATGATGGACAGGTGGGAGGATGGACCCAAGAGTATG CTGGACTTACCTTCGTTGTGGTGAGAGGAGCAGGCCATGAAGTGCCTCTGCATAAACCCAAACAAGCTCTCACACTCGTCAAAGCCTTCTTATCAGGAAC TCCAATGCCAACCCTTCAACTAGTCAGCGACTCTTGA
AA sequence Show only first row Show all	>Potri.018G103100.3 pacid=42801530 polypeptide=Potri.018G103100.3.p locus=Potri.018G103100 ID=Potri.018G103100.3.v4.1 annot-version=v4.1 MADPRFPFGSFEFSIATTLIIFVNLYLGVFASSLRDPVAQQHLDRVQKLPGQNFDVNFAHYSGYVTVNEKYGRALFYWLVEAVEDPQSKPLLLWLNGGPG CSSIAYGMAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGYSYSNTSSDLLNNGDKKTAADSLAFLLNWFERFPQYKGRDFYITGESYAGHYV PQLSQAIVRYNQATKDEKINLRSYMVGNALTDDYHDHLGLFQFMWAAGLISDQTYKKLNLLCDFESFIHSSVACDKMEDIATKELGNIDPYSIFTPSCSA NVSQSNLLPKRKHRVGRVSEKYDPCTETHTTVYFNLPEVQKALHVSPEFAPARWETCSEVVNINWKDSPRTVLDIYKELIHSGLHVWVFSGDTDAVIPVT STRYSIDALKLPTVKPWGAWYDDGQVGGWTQEYAGLTFVVVRGAGHEVPLHKPKQALTLVKAFLSGTPMPTLQLVSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	0	1
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	2.44	0.7563	ACX1.1
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	3.46	0.7749	ATCS.2
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	15.49	0.7062
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.007G021300 [exp]	20.00	0.6968
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	20.97	0.6741	Pt-ACLA.1
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	27.56	0.7438
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	38.32	0.6143
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	54.11	0.6836
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.003G121700 [exp]	57.92	0.6417
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	69.55	0.6120

Compare expression of checked genes

Potri.018G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.