Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30820 179 / 7e-58 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180900 [exp] 328 / 2e-116 AT4G30820 171 / 1e-54 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022901 [exp] 185 / 4e-60 AT4G30820 144 / 4e-44 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3) Lus10024924 [exp] 180 / 8e-58 AT4G30820 143 / 2e-43 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06391 [poplar] [flax] MAT1 CDK-activating kinase assembly factor MAT1
Representative CDS sequence Show only first row Show all	>Potri.018G103200.2 pacid=42801888 polypeptide=Potri.018G103200.2.p locus=Potri.018G103200 ID=Potri.018G103200.2.v4.1 annot-version=v4.1 ATGGTGGTCTCAAGTAATAATCCTCACAACAAGGAGATACTGGTCAGAAGAAGGATTGCTAGCATATTTAATAAGCGAGAAGAGGATTTTCCATCGTTGA GGGAGTACAATGATTACTTGGAGGAAGTAGAAGACATGATATTTGACTTGGTTGCTGGAGTTGATGTCCCTGCTATTGAAGAAAAAATTGCAGAGTATCA AAAAGAAAATGCAGATCTAATATTGATTAATCAAGCTCGGAAGGCTGAAGAATTGGCCTTAGCTATGGCAGCAAGCAAGGGGCCTCGTGCACAAACTGAT AATACTGATGGGAGCTCCCAGGGAGGCATCAGTGTTGAAGCTGGGCAGTATGCACCTACAATTGCTGGAGGGCAGCCTCGGCCAATAGGCATTGCTCCAC AACCAGTGCCTCTCAGAGGAGGGCCAGACATGCACGGATATGCAGAAGATGAGGAAACAATGAGGATCCGAACAGAGAGGGCGAGTAGCGCTGCTGGGTG GAGCATAGAGTTCAGCAAGAAAAGGGCATTTGAGGAAGCCTTTGCAAGCATTTGCGTGTAG
AA sequence Show only first row Show all	>Potri.018G103200.2 pacid=42801888 polypeptide=Potri.018G103200.2.p locus=Potri.018G103200 ID=Potri.018G103200.2.v4.1 annot-version=v4.1 MVVSSNNPHNKEILVRRRIASIFNKREEDFPSLREYNDYLEEVEDMIFDLVAGVDVPAIEEKIAEYQKENADLILINQARKAEELALAMAASKGPRAQTD NTDGSSQGGISVEAGQYAPTIAGGQPRPIGIAPQPVPLRGGPDMHGYAEDEETMRIRTERASSAAGWSIEFSKKRAFEEAFASICV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30820			cyclin-dependent kinase-activa...		Potri.018G103200 [exp]	0	1
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Potri.002G245900 [exp]	1.41	0.7326
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.014G042700 [exp]	3.16	0.6970
AT4G08330			unknown protein		Potri.002G083600 [exp]	3.74	0.6845
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.010G255000 [exp]	4.12	0.6742
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.002G123100 [exp]	7.34	0.6732
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	7.87	0.7198
AT5G13780			Acyl-CoA N-acyltransferases (N...		Potri.009G056600 [exp]	8.48	0.6584	SGB901
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.008G002400 [exp]	9.53	0.7083
AT1G49400		EMB1129	embryo defective 1129, Nucleic...		Potri.018G150100 [exp]	10.95	0.7117
AT1G45976		SBP1	S-ribonuclease binding protein...		Potri.002G124700 [exp]	11.22	0.7182

Compare expression of checked genes

Potri.018G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.