Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24120 1381 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) AT5G15700 1140 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1136 / 0 MGP3 male gametophyte defective 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181100 [exp] 1758 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.008G112800 [exp] 1181 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.010G136700 [exp] 1175 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.017G105801 [exp] 1162 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.004G111600 [exp] 1157 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022181 [exp] 1376 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1136 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1135 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 1134 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1131 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1110 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1083 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10010771 [exp] 898 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 465 / 4e-157 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [poplar] [flax] RNA_pol DNA-dependent RNA polymerase PF14700 [poplar] [flax] RPOL_N DNA-directed RNA polymerase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G103300.1 pacid=42802093 polypeptide=Potri.018G103300.1.p locus=Potri.018G103300 ID=Potri.018G103300.1.v4.1 annot-version=v4.1 ATGGCTTCCACGACCACTTTCTCTATTCAACACCCAACATGGACAACATCAAAACATCCTAAGTTTCATAAACCCTACAAAAACCTCCATTTCCTCTCTA ACCCAACTTCTCATTCTCTTTCCAATCCTTCTTCCATCTATTCCTCTTCTTTCCCTCTCAGTCCCAAATTCCCTCTTCTAAACCCACCACTTCCATTTCA CCCTTTGCATGATTCTTCTCATGACCGTCTCCTTGAAGACTTTGAAATCCCCACCATTTGTAGCCACCAAAAGCTTGAAACTTTGATCAAATTTGACCAA ATTATGCACGGAGAGTCTTCGAAAAAGGTTTTCATTCAAGACCCACCTTGGATTTCTGCTCATTTTTGGAAGGGTATGTATAAATTAGCCAATAAAAAGG TGAAGGTAGAGTTCAAGGATATTGAGAAGAGGAAGTATAATTTGTTGAGGAGGCGGCAAATTAGGGAAGAGACTGAAGCGTGGGAGAGAATGGCTGATGA GTATAGGGGGTTGGTGAGGGAAATGTGTGAGAGAAAGTTGGCACCTAACTTGCCTTATGTGAAAGGTTTGCTCTTGGGGTGGTTTGAACCATTGAAAGAG GCTATAGAGAAGGAGCAGAAAATGGAGAAATCCAAGAAGCAGAAGTCGGCATTTTCTCCCAATATTGAATTGTTACCTGCTGATAAAATGGCAGTCATTG TTATGCATAAGATGATGGGGTTGTTGATGGTGGGGCATGAAGATGGGTGCGTTCGGGTTGTCCAGGCTGCAGTGCAGATTGGCATGGCTATAGAGCAGGA GGTTAGAATTCATAATTTCTTGGAGAAGACCAAGAATTACCAAAGGAAGAAGACAATGCATGAAGTTCAAGAGACCATGGACAAGGAGAAGGAGGTGCTC AGGAAACGTGTAAATAGTTTGATTAGAAGGAAAAGGCTCATGGAGGTGCAAAATCTGGTGAAACAGGATGAAACTAAACCTTGGAGTCGAGGTACACAAG CTAAGCTCGGAAGTCGTCTAATAGAATTATTAACTGAAACAGCTTATGTACAACCTCCTGTTAACCAGTCAGAGGATATTCCACCAGATGTTCGACCTGC CTTTAGGCACATATTTAAAACTTTAACAAAGAACCCAGGGCAGAAAATTGTGAAGAAGTATGGGGTTATAGAATGCGATCCCCTCATCCTCACAGGGCTT GATGGAACAGCTAAGCACATGCTGATTCCTTATTTTCCAATGCTGGTGCCTCCCAAAAAATGGAAAGGGTATGATAAGGGTGGGCACTTGTTCTTGCCTT CGTATGTCATGCGCACTCATGGATCTCGGCAGCAACAAGTTGCAGTCAGGAGTGTTCCTGGGAAACAGATGCAGAAAGTATTTGAGGCTCTGGATACACT CGGAAATACCAAATGGAGGGTGAACAGAAGATTGCTGGATGTGGTGGAGAGGATATGGACAAGTGGTGGTAACATTGCGGGCCTGGTTGATAGAGAAGAT ATTCCTATACCAGAGAAACCATCCTCAGATGATCTAACAGAAATTCAAAAGTGGAAATGGAGTGTGAGGAAGGCAAAGAAGATAAACCAAGAGAGGCACT CTCAAAGATGTGACACTGAACTTAAGCTTTCTGTGGCTCGGAAACTGAAAGATGAAGAGGGATTTTATTATCCTCACAATCTTGATTTTCGAGGTCGTGC ATATCCGATGCACCCACATTTGACTCATCTAAGTTCTGATCTTTGTCGAGGAGTTCTTGAATTTGAAGAAGGAAGGCCATTAGGGAAGTCTGGATTACGT TGGTTGAAAATACATCTAGCAAACTTGTATTCAGGCGGGGTTGAAAAGTTGTCCCATGATGGCCGTCTAGCATTTGTCGAGAACCATCTAAGTGAGATAT TTGATTCAGCAAAAAACCCTGTAAATGGAAAGCGCTGGTGGTTAAAAGCTGAAGATCCTTTCCAGTGCTTGGCTGCTTGTATTAATCTGTCAGAAGCCTT GAATAGTGCATCGCCACATACTGTCATCTCCCACCTGCCAATCCATCAGGATGGTTCATGTAATGGTCTACAGCACTATGCAGCCTTGGGAAGAGACACT CTGGAAGCAGCGGCAGTTAACTTAGTTGCTGCAGAGAAACCTTCGGATGTTTATTCAGAAATTGCCGTTAGGGTCCATGAAATAATTAGAAGGGACAGCA GTAAGGATCCTGCTACAAACCCACATGCTTTATTAGCCAAGATCCTAGTTGATCAGGTGGATCGGAAATTGGTTAAACAAACAGTGATGACTTCAGTGTA TGGTGTCACTTATGTTGGGGCACGTGAACAGATAAAAAGAAGATTAGAGGAGAAGGGTCATATTACGGATGATAGACTGCTCTTCAGTGCAGCCTGTTAT ACTGCTAAAGTGACATTGACTGCACTAGGAGAGTTGTTCCAAGCTGCTCGTGATATAATGAGCTGGCTTGGTGATTGCGCAAAGATTATTGCTTCAGAAG ATCAGCCTGTGCAGTGGACAACTCCACTTGGCCTTCCTGTTGTGCAGCCTTACTATAAGACCGAACGACATCTTATAAAAACTTCACTTCAGATTTTGGC CCTGCAGCGGGAAGGCAGTTCGGTACAGGTTAGAAAACAGAGAACTGCTTTCCCTCCGAATTTTGTGCACTCGCTTGACGGCTCACACATGATGATGACT GCAGTTGCATGCCGGGATGCTGGTTTATGTTTTGCAGGTGTTCATGACTCTTTCTGGACCCATGCAACAGATGTGGATTTGATGAATAGGATATTGCGGG AGAAATTTGTGGAGCTTTATAACATGCCAATACTTGAAAATTTACTTGAAGACTTCCAGACGTCGTACCCAACATTGCAGTTTCCACCTCTGCCTGAGAG AGGCAACTTTGATTTGCAAAAAGTTCTTAGATCTCCATACTTCTTCAACTGA
AA sequence Show only first row Show all	>Potri.018G103300.1 pacid=42802093 polypeptide=Potri.018G103300.1.p locus=Potri.018G103300 ID=Potri.018G103300.1.v4.1 annot-version=v4.1 MASTTTFSIQHPTWTTSKHPKFHKPYKNLHFLSNPTSHSLSNPSSIYSSSFPLSPKFPLLNPPLPFHPLHDSSHDRLLEDFEIPTICSHQKLETLIKFDQ IMHGESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKE AIEKEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTMHEVQETMDKEKEVL RKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGL DGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDRED IPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLR WLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDT LEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSSKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACY TAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMT AVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	0	1
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	1.41	0.9745
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	2.23	0.9501
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	2.44	0.9665
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	2.64	0.9445
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	3.00	0.9514
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	4.24	0.9472
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	4.89	0.9507
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	6.63	0.9130
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	8.48	0.9360
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	11.18	0.9111

Compare expression of checked genes

Potri.018G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.