Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 1170 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 447 / 5e-141 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 446 / 7e-141 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 440 / 4e-138 EFR EF-TU receptor (.1) AT3G47580 437 / 4e-137 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 433 / 1e-135 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 409 / 2e-125 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 380 / 7e-116 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G01950 382 / 2e-115 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G26330 370 / 1e-112 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181200 [exp] 1635 / 0 AT2G24130 1186 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184100 [exp] 797 / 0 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G042500 [exp] 795 / 0 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G099100 [exp] 520 / 1e-168 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G037400 [exp] 519 / 6e-168 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 518 / 9e-168 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030800 [exp] 514 / 3e-166 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 510 / 7e-165 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 503 / 5e-162 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010772 [exp] 993 / 0 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004388 [exp] 513 / 8e-162 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 488 / 3e-156 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 487 / 1e-154 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 478 / 1e-152 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 478 / 2e-152 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 478 / 3e-152 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 476 / 5e-152 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 473 / 8e-151 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 472 / 2e-150 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G103400.2 pacid=42801284 polypeptide=Potri.018G103400.2.p locus=Potri.018G103400 ID=Potri.018G103400.2.v4.1 annot-version=v4.1 ATGGGTTCTTGTAAATTCTCCATGTTTAGTTTCCTTTGTTTGATCATCATTTTGTTCGTGGTTTCTGGGGAAGAGATAAGTCCCCAGCTTGTTAAGGAGA GAATCTCATTGCTTTCTTTCAGGTCTGATGTAGTATTAGACCCTGAAGGTGCGCTTGAGAGCTGGAACTCTTCAGGTATTCATGTTTGCAACTGGACAGG AGTCAAGTGCAACAATGCTAGTGATCATGTTGTCCAGCTTGACCTAAGTGGCCTGTCACTTCGTGGCAGGATTTCTCCGGTTCTTGCGAATCTTTCTTCT TTGTTGGTTCTTGATTTGTCATGGAACTTCTTTGAAGGCCATATTCCAGCAGAGTTGGGTGATCTTCTCCAGTTAAGACAGCTCAGTTTATCATGGAATC TTCTCGGTGGAAACATTCCCGAGGAGTTGGGATTTCTTCATCAATTAGTATATCTTGATTTGGGAAATAACAGGCTTGCTGGTGATATTCCTGCACCACT TTTCTGCAATGGATCTTCTTCTTTGCAGTATATGGACCTTTCTAACAATTCTTTAACTGGAAAAATTCCTTTGAATAATGAATGTAAGCTTGGTGCTTTA AGGTTTCTTTTGCTTTGGTCTAATAGACTAGTTGGCGGGGTCCCTCGAGCACTTTCTAACTCCACCAATCTTGAATGGCTCGATTTGGAGTCAAATATGC TGAGTGGGGAATTGCCTTCAGAGATTGTACGCAAAATGCCAAAGTTACAGATCCTCTATTTGTCTTACAATGACTTCGTTAGCCATGATGGTAACACAAA TCTTGAACCTTTTTTTGCTTCTTTAGTTAATTCATCTAACCTTCAGGAGCTTGAATTAGCAGGAAATAACCTTTTTGGAGAGATACCTCCTATTATTGGT GATCTTTCTACCAAATGTGTACAGATTCATCTAGATGAGAATATTCTTTATGGCTCCATACCCTCTCACATTTCAAATCTTGTCAACCTCACCCTCTTAA ACTTGTCCAGTAACCTTCTGAATGGTACCATCCCACCAGAATTATGTCGTATGGGAAAACTAGAGAGGGTTTATTTATCAAACAATTCACTCTCTGGTGA AATTCCAGCAGCTCTTGCTAACATTTCCCATTTAGGCCTTCTTGACTTGTCAAAAAACAAACTTACAGGCTCCATCCCAGACAGTTTTGCCTACCTTTCA CAGCTTCGGAGACTCTTTCTCTATGAAAATCAACTGTCAGGAACCATACCACCAAGCTTGGGACAATGTGTCAACTTGGAGATCCTAGACCTTTCTAGCA ATGACATTTCTGGGACAATTCCTAGGGAAGTTGCAGGATTGAGGAGCTTGAAGTTGTATTTGAATTTGTCAAGAAATCATTTACATGGGCCTTTACCACT TGAGCTGAGTAAAATGGACATGGTGCTAGCAGTCGATCTATCTTCCAACAATCTCTCTGGCACAGTCCCGCCACAACTTGGAAGCTGCATTGCACTGGAG TACCTTAACCTTTCAGGTAATGTCTTAGAAGGCCTTCTTCCTGCTACAATAGGGCAGTTGCCTTATCTTAAAGAACTCGACGTATCTTCAAACCAATTGA GTGGCAATATACCACAATCTATTGAGGCATCGCCGACTCTCAAGCATCTCAACTTCTCTTTCAACAAGTTCTCTGGGAACATATCAAACAAGGGAGCATT TTCTTCCCTGACAATAGACTCCTTCCTTGGCAATGATGGCCTTTGTGGACAAATAAAGGGCATGCCCAACTGCCGGAGGAGAAATGCTCATCTTTCATTT ATTTTACCTGTCCTACTGTCACTGTTTGCTACTCCCTTATTATGCATGTTCGCATACCCCCTCGTACTCAGGTCAAGGTTCAGAAGGAAAATGGTGATAT TCAATGGAGGGGACTTGGGAGATGAGGACAAAGAAACAAAAGACCTCAAGCATCCAAGAATCTCATATCGACAGCTTATTGAAGCTACAGGGGGTTTTAG CGCCTCAAGCCTAATAGGTTCAGGCCGGTTTGGCCATGTCTACAAGGGCGTTCTTCAAGACAATACAAGGATAGCTGTTAAGGTATTGGATTCAAAGGAA GATGGAGAAATTTCAAGAAGTTTCAAAAGAGAATGCCAAGTACTAAAGAGGGCCAAACATAGAAATTTGATCAAGATCATCACAACATGCAGCAAGCCAG ACTTTAAGGCTCTTGTCCTTCCTCTCATGTCAAATGGGAGCCTGGAAGGGCATTTATACCCAAGCCATGGACTAAATACAGGGCTGGATTTGATTCAGTT GGTTAGCATATGTAATGATGTGGCTGAAGGAGTGGCCTATTTGCACCACTATTCTCCTGTTAGGGTAGTGCACTGTGATCTCAAGCCAAGCAATATTCTT CTGGATGAAGACATGACAGCTTTGGTAACTGACTTTGGAATCGCAAGATTGATTAAAGGTGCTGATGATAGTAATTCAACAGATGATTCAATGTTCCTCA GCTCATCTGATCATGGATTGTTGTGTGGATCTGTCGGCTACATTGCCCCTGAATATGGAATGGGAAAGCGTGCTTCAACGCAAGGAGATGTTTACAGTTT TGGAGTCCTCCTGCTAGAAATTATAACAGGAAGGCGCCCCACAGATGTTCTATTTCATGAAGGTTCAAGCTTGCATGAATGGGTTAAGAGTCACTATCCC CACAAGCTCAAGCCCATAGTTGATCAAGCAGTGCTTAGGTGTGCTCCATCTGTCATGCCGGTATCCTATAACAAAATATGGAGTGATGTAATCTTGGAAT TGATTGAGCTTGGTCTTGTTTGCACACAAAATAACCCTTCAACAAGACCAAGCATGCTAGATGTAGCCAATGAAATGGGTAGCCTAAAGCAGTATCTCTC TAACCCTCCCTCCCTGGTGATTGAATAA
AA sequence Show only first row Show all	>Potri.018G103400.2 pacid=42801284 polypeptide=Potri.018G103400.2.p locus=Potri.018G103400 ID=Potri.018G103400.2.v4.1 annot-version=v4.1 MGSCKFSMFSFLCLIIILFVVSGEEISPQLVKERISLLSFRSDVVLDPEGALESWNSSGIHVCNWTGVKCNNASDHVVQLDLSGLSLRGRISPVLANLSS LLVLDLSWNFFEGHIPAELGDLLQLRQLSLSWNLLGGNIPEELGFLHQLVYLDLGNNRLAGDIPAPLFCNGSSSLQYMDLSNNSLTGKIPLNNECKLGAL RFLLLWSNRLVGGVPRALSNSTNLEWLDLESNMLSGELPSEIVRKMPKLQILYLSYNDFVSHDGNTNLEPFFASLVNSSNLQELELAGNNLFGEIPPIIG DLSTKCVQIHLDENILYGSIPSHISNLVNLTLLNLSSNLLNGTIPPELCRMGKLERVYLSNNSLSGEIPAALANISHLGLLDLSKNKLTGSIPDSFAYLS QLRRLFLYENQLSGTIPPSLGQCVNLEILDLSSNDISGTIPREVAGLRSLKLYLNLSRNHLHGPLPLELSKMDMVLAVDLSSNNLSGTVPPQLGSCIALE YLNLSGNVLEGLLPATIGQLPYLKELDVSSNQLSGNIPQSIEASPTLKHLNFSFNKFSGNISNKGAFSSLTIDSFLGNDGLCGQIKGMPNCRRRNAHLSF ILPVLLSLFATPLLCMFAYPLVLRSRFRRKMVIFNGGDLGDEDKETKDLKHPRISYRQLIEATGGFSASSLIGSGRFGHVYKGVLQDNTRIAVKVLDSKE DGEISRSFKRECQVLKRAKHRNLIKIITTCSKPDFKALVLPLMSNGSLEGHLYPSHGLNTGLDLIQLVSICNDVAEGVAYLHHYSPVRVVHCDLKPSNIL LDEDMTALVTDFGIARLIKGADDSNSTDDSMFLSSSDHGLLCGSVGYIAPEYGMGKRASTQGDVYSFGVLLLEIITGRRPTDVLFHEGSSLHEWVKSHYP HKLKPIVDQAVLRCAPSVMPVSYNKIWSDVILELIELGLVCTQNNPSTRPSMLDVANEMGSLKQYLSNPPSLVIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	1.00	0.9552
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	5.00	0.8666	NANN.1
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075300 [exp]	5.29	0.9154
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	5.29	0.9329
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	6.00	0.9008
					Potri.016G047700 [exp]	7.54	0.9260
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	8.36	0.9145
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G204801 [exp]	8.83	0.8424
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	8.94	0.9001	Pt-PAP8.3
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	9.48	0.9117

Compare expression of checked genes

Potri.018G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.