Plant FIBer expression Database

Potri.018G103700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30720 974 / 0 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022174
[exp]
988 / 0 AT4G30720 926 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10010777
[exp]
330 / 3e-108 AT4G30720 320 / 1e-104 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10010776
[exp]
263 / 6e-83 AT4G30720 239 / 1e-74 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.018G103700.1 pacid=42801178 polypeptide=Potri.018G103700.1.p locus=Potri.018G103700 ID=Potri.018G103700.1.v4.1 annot-version=v4.1
ATGTCCGTTCTCCGGTCCGTTCTCCTTCCTCTCTCTCTCCCCTTCCCAAACAGCACCTCAATCCTCCCCTATCCCACCCGTAGACTTCACCATCCCCAAA
CACTCCCAAAAATTATCTGCGCCACAAAACGAACGGGAAAGCAAAGATATCCCTCAGAGAAGAAGAAACTCAAGTTGAAGCACAAAGAAGCTCTGACTGA
TGTCAAGAACAAATTTGATGGCATTTGGAGGCTATCCAAGCTTGCTGTTTCCGTTCAAGACGACCCCGGAAAGGACTTTCTCGGCGTCTCCGACGGGTTG
CTTCAAGAAATTGCCAAAGCTATCAAGTTCCCGGTTGCTTCAATGTTGCCCCCTGAAGCATTTTCGGTTATTAGGAAATCGTTTGATGCGAGGAAGATGT
TAAAGGAGGCAAAATTTGTGTATACAGTGGATATGGATGTGAGTGAACTTATAAATCTAGAACCTCGTACTAGGGATTTCATTTCGGACTTAGAGCCTAG
AGTTGGGCTTATAGAACATATACCTCGAGAAAGAGTCTCGGGTGATATAATTAGTGTAATACAAGATTGTAAGAAGGTTGAGGGAGAAAGGTTACTGAAA
GAAGGTGGTGTTAATGGTTATTCTTCCAATGCGGGTGCATATAAGTACACGGGGAGTAGAAAACCGAAAATTGCAGTTGTAGGTAGCGGGCCATCTGGGT
TGTTTGCTTCTTTGGTTCTTGCAGAGCTTGGTGCAGATGTTACTTTGATAGAAAGAGGCCAGCCAGTTGAACAAAGGGGACGTGATATTGGTGCTTTGAT
GGTTCGGCGGATTTTGGAATTGGAGAGCAATTTTTGCTTTGGGGAGGGTGGTGCAGGTACTTGGAGTGATGGAAAGCTAGTAACTAGAATTGGAAGGAAC
AGTGACAGTGTTTTGGCGGTTATGAAAACTCTGGTTCACTTTGGAGCCCCGGAAAACATCTTGATTGATGGAAAGCCTCATTTGGGAACTGATAGGCTGG
TTCCGTTGCTCCGCAACTTTCGCCAAAATCTACAGGACCAGGGTGTTTCAATCAAGTTTGGGACAAGGGTAGATGATCTGATAATAGAGGATGGTCATGT
TGTGGGTGTCAAAGTTTCCGATTCAAAGGACAAACAGAAGCTGGATTGCCAAAAGTTGGGATTTGATGCTGTCATTCTGGCTGTGGGCCATTCTGCTCGT
GATATATATCACATGCTTCTTTCCCATGATATTGATTTGATGCCAAAAGATTTTGCTGTTGGTTTGCGGATTGAACACCCCCAAGAGCTAATAAACAGTG
TACAGTATTCTAGTCTGGGCACTGAAGTTCATAGAGGACGGGGGAAAATACCAGTGGCAGATTACAAGGTTGCTAGTTATGTTAGTAGAGAGGATGGGAA
GACACCCTCAAGTTCAGGACCTACAAGCCGTAGTTGCTATTCTTTCTGCATGTGTCCCGGTGGACAGGTTGTCCTGACTAGTACAGATCCATCTGAGATA
TGCATCAATGGGATGTCATTTTCTCGTCGCGCTTCTAAGTGGGCAAATGCTGCACTTGTTGTCACTGTTTCGACACAGGACTTTAATTCCCTGAATTTTC
ATGGGCCTCTTGCAGGGATTGACTTCCAGAGGGAGTTTGAGCGAAGAGCAGCTGTAATGGGAGGAGGAGACTTTGTAGTGCCTGTGCAGACAGCAACTGA
TTTTCTAGACGGCAAGCTATCAGTAACATCTTTGCCCCCATCAAGCTATCGGTTGGGGGTGAAAGCAGCAAAGCTCCATGAGTTATTTCCAATGCACATC
ACAGATGCTTTGCGGCATTCAGTCTCCGTGTTTGACAAAGAGTTACCAGGATTTATCTCCAATGAGGCTCTTCTCCATGGAGTAGAGACAAGAACCAGCT
CTCCTATTCAGATTCCTCGTAGCAGTGACACTTATGAAAGTATGTCCTTGAAAGGGCTCTACCCAGTTGGTGAAGGAGCAGGTTATGCTGGTGGGATTGT
AAGTGCCGCAGTTGATGGCATGCATGCAGGATTTGCTGTGGCAAAAAGATTTGGTTTGTTTCTCGATGGCATAGAATCAGTTTTGGGGAAGGCTCAAGGT
GCTGGATTTGCAAAGTACTAG
AA sequence
>Potri.018G103700.1 pacid=42801178 polypeptide=Potri.018G103700.1.p locus=Potri.018G103700 ID=Potri.018G103700.1.v4.1 annot-version=v4.1
MSVLRSVLLPLSLPFPNSTSILPYPTRRLHHPQTLPKIICATKRTGKQRYPSEKKKLKLKHKEALTDVKNKFDGIWRLSKLAVSVQDDPGKDFLGVSDGL
LQEIAKAIKFPVASMLPPEAFSVIRKSFDARKMLKEAKFVYTVDMDVSELINLEPRTRDFISDLEPRVGLIEHIPRERVSGDIISVIQDCKKVEGERLLK
EGGVNGYSSNAGAYKYTGSRKPKIAVVGSGPSGLFASLVLAELGADVTLIERGQPVEQRGRDIGALMVRRILELESNFCFGEGGAGTWSDGKLVTRIGRN
SDSVLAVMKTLVHFGAPENILIDGKPHLGTDRLVPLLRNFRQNLQDQGVSIKFGTRVDDLIIEDGHVVGVKVSDSKDKQKLDCQKLGFDAVILAVGHSAR
DIYHMLLSHDIDLMPKDFAVGLRIEHPQELINSVQYSSLGTEVHRGRGKIPVADYKVASYVSREDGKTPSSSGPTSRSCYSFCMCPGGQVVLTSTDPSEI
CINGMSFSRRASKWANAALVVTVSTQDFNSLNFHGPLAGIDFQREFERRAAVMGGGDFVVPVQTATDFLDGKLSVTSLPPSSYRLGVKAAKLHELFPMHI
TDALRHSVSVFDKELPGFISNEALLHGVETRTSSPIQIPRSSDTYESMSLKGLYPVGEGAGYAGGIVSAAVDGMHAGFAVAKRFGLFLDGIESVLGKAQG
AGFAKY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Potri.018G103700
[exp]
0 1
AT3G24560 RSY3 RASPBERRY 3, Adenine nucleotid... Potri.018G081500
[exp]
2.00 0.8547
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
3.00 0.8761
AT1G28560 SRD2 SHOOT REDIFFERENTIATION DEFECT... Potri.015G143000
[exp]
7.07 0.8528
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.015G079300
[exp]
8.48 0.8329
Potri.015G043301
[exp]
9.16 0.8340
Potri.018G145600
[exp]
9.27 0.8693
Potri.018G138206
[exp]
10.81 0.8631
AT1G22660 Polynucleotide adenylyltransfe... Potri.013G111300
[exp]
10.95 0.7743
AT3G13180 NOL1/NOP2/sun family protein /... Potri.001G368500
[exp]
12.72 0.7784
AT1G56190 Phosphoglycerate kinase family... Potri.016G091800
[exp]
14.73 0.7979

Potri.018G103700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.