Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17420 1730 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 1386 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1359 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G64740 1353 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 1342 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT2G21770 1340 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1333 / 0 CESA5 cellulose synthase 5 (.1) AT5G44030 1310 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT2G25540 1295 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 1211 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181900 [exp] 1932 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1407 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1402 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.001G266400 [exp] 1388 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.018G029400 [exp] 1387 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1386 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.009G060800 [exp] 1385 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1377 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.005G087500 [exp] 1375 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 1392 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1387 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1369 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1359 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1350 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1340 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1337 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1325 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1278 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10029245 [exp] 1239 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.018G103900.2 pacid=42801689 polypeptide=Potri.018G103900.2.p locus=Potri.018G103900 ID=Potri.018G103900.2.v4.1 annot-version=v4.1 ATGGAAGCTAGTGCTGGACTGGTCGCTGGCTCTCACAACCGCAACGAGCTTGTTGTCATTCATGGCCATGAAGAGCATAAACCTTTGAAGAACTTGGATG GTCAAGTTTGTGAGATTTGTGGCGATGAGATTGGCGTAACTGTGGATGGTGATTTGTTTGTGGCTTGCAATGAGTGTGGTTTTCCTGTGTGTAGACCATG CTACGAGTATGAAAGAAGAGAAGGGACTCAAAATTGTCCCCAGTGCAAGACTAGATACAAGCGTCTCAAAGGGAGTCCAAGGGTGGAGGGAGATGATGAA GAAGATGATGTGGATGATATTGAACATGAGTTCATCATTGAAGATGAACAAGACAAGAATAAGCATCTCACTGAGGCAATGCTTCATGGGAAAATGACTT ACGGAAGAGGCCATGATGATGAAGAAAATAGCCAATTCCCACCAGTTATAACTGGAATCAGATCAAGGCCTGTGAGTGGAGAGTTCTCCATTGGATCTCA TGGAGAACAGATGCTATCTTCTTCACTTCATAAGAGAGTGCACCCATATCCAGTTTCTGAACCTGGAAGTGCAAGATGGGACGAAAAGAAAGAGGGAGGG TGGAAAGAGCGGATGGACGAGTGGAAAATGCAGCAAGGAAATCTGGGGCCTGAACAAGATGACGATGCAGAAGCAGCCATGTTAGAAGATGCAAGACAGC CACTCTCCAGGAAAGTTCCTATTGCATCCAGCAAGATCAATCCGTATAGAATGGTTATTGTTGCTAGGCTAATCATACTGGCCGTCTTTCTTCGCTATCG AATTTTGCATCCGGTGCATGATGCAATTGGGCTCTGGCTGACATCTATAGTCTGCGAAATCTGGTTTGCAATTTCATGGATCCTTGATCAATTCCCCAAG TGGTTGCCAATCGATCGCGAGACTTATCTGGATCGCCTTTCTCTCAGGTATGAGAAGGAAGGCGAGCCCAATATGCTTGCTCCAGTGGATATCTTTGTCA GTACCGTGGATCCAATGAAAGAACCCCCTCTAGTCACGGGCAACACACTTTTATCAATTTTGGCCATGGACTATCCAGTTGAAAAGATCTCATGTTACCT ATCTGACGATGGTGCTTCAATGTGCACCTTTGAAGCCATGTCTGAAACTGCTGAATTTGCTCGAAAATGGGTGCCATTCTGCAAGAAATTTAACATAGAA CCACGAGCCCCTGAGTTTTACTTCACTCTTAAGGTTGATTATCTCAAGGACAAAGTTCAGCCTACCTTTGTTAAGGAACGTCGAGCTATGAAGAGAGAAT ATGAAGAATTCAAGGTTCGGATAAATGCGATTGTAGCAAAAGCACAGAAGGTTCCTACAGAGGGGTGGATTATGCAAGATGGAACACCATGGCCTGGAAA CAATACGAGGGATCACCCTGGTATGATTCAAGTATTTCTCGGTCACAGTGGAGGACATGACGTTGAAGGGAACGAGCTCCCTCGCCTTGTATATGTATCT CGAGAGAAGAGGCCTGGTTTTTCACATCATAAAAAAGCCGGTGCCATGAATGCCCTGATTCGGGTCTCTGCAGTGCTTACCAATGCTCCTTTCATGCTGA ACTTGGATTGTGACCATTATGTAAATAATAGCAAGGCCGTTCGAGAGGCTATGTGTTTCTTGATGGACCCCCAGATTGGAAAGAAAGTTTGCTACGTGCA ATTTCCTCAAAGATTTGATGGCATTGATACACATGATCGATACGCCAACAGAAACACTGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGAATTCAG GGTCCAGTGTATGTGGGCACAGGATGCGTTTTCAAAAGGCAAGCTTTGTATGGCTATGACCCTCCTAAAGATCCAAAGCGCCCAAAGATGGAAACCTGTG ACTGCTGCCCATGTTTTGGACGTCGCAAAAAGAAGAATGCTAAGAATGGTGCAGTTGGAGAAGGAATGGATAATAATGACAAGGAGCTGTTGATGTCCCA CATGAATTTTGAAAAGAAGTTTGGACAATCAGCAATTTTTGTGACTTCAACTTTAATGGAAGAAGGTGGTGTACCTCCTTCCTCGAGTCCGGCAGCTCTG CTAAAAGAAGCCATCCATGTGATCAGTTGTGGATATGAAGACAAAACTGAATGGGGACTCGAGCTGGGCTGGATTTACGGTTCGATCACAGAGGATATTC TGACAGGTTTTAAGATGCATTGTCGTGGCTGGAGGTCTATTTACTGTATGCCAAAGAGAGCTGCATTTAAGGGTTCAGCTCCCATCAATCTATCAGATCG GCTCAACCAAGTCCTCCGATGGGCTCTTGGTTCTGTTGAAATTTTCTTCAGTCGTCACAGCCCTATGTTGTATGGCTACAAGGAAGGAAAGCTCAAGTGG CTCGAGAGGTTTGCGTATGTGAACACAACTATCTACCCCTTCACCTCCTTAGCACTCGTTGCATACTGTTGCCTCCCTGCCATCTGCCTGCTTACTGATA AATTTATCATGCCAGAGATAAGCACCTTTGCAAGTCTTTTCTTCATTGGCTTGTTTTTGTCAATCTTTTCCACGGGCATTCTTGAGCTCAGATGGAGCGG AGTAAGCATTGAGGAATGGTGGAGAAACGAGCAATTCTGGGTTATAGGTGGTGTATCAGCTCACCTCTTTGCTGTTGTCCAAGGTCTTCTGAAAGTTTTA GCAGGTATCGACACAAACTTCACTGTCACATCCAAGGCAACAGACGATGACGATTTTGGAGAGCTATATGCCTTTAAATGGACAACCCTGCTTATCCCTC CAACCACTATCTTAATCATCAACCTTGTTGGAGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGGTACCAGTCATGGGGACCTCTATTCGGAAAGCT CTTCTTTGCCTTCTGGGTGATTGTCCATCTCTACCCGTTCCTCAAAGGTCTGATGGGGAGGCAAAACAGGACACCGACTATTGTGGTTATATGGTCAGTG CTCTTGGCTTCCATCTTCTCCTTGCTTTGGGTCCGGATTGATCCATTTGTGATGAAAACCAGGGGACCTGACACCAAGCAATGTGGACTCAACTGTTAA
AA sequence Show only first row Show all	>Potri.018G103900.2 pacid=42801689 polypeptide=Potri.018G103900.2.p locus=Potri.018G103900 ID=Potri.018G103900.2.v4.1 annot-version=v4.1 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEIGVTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGDDE EDDVDDIEHEFIIEDEQDKNKHLTEAMLHGKMTYGRGHDDEENSQFPPVITGIRSRPVSGEFSIGSHGEQMLSSSLHKRVHPYPVSEPGSARWDEKKEGG WKERMDEWKMQQGNLGPEQDDDAEAAMLEDARQPLSRKVPIASSKINPYRMVIVARLIILAVFLRYRILHPVHDAIGLWLTSIVCEIWFAISWILDQFPK WLPIDRETYLDRLSLRYEKEGEPNMLAPVDIFVSTVDPMKEPPLVTGNTLLSILAMDYPVEKISCYLSDDGASMCTFEAMSETAEFARKWVPFCKKFNIE PRAPEFYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPTEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDVEGNELPRLVYVS REKRPGFSHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQ GPVYVGTGCVFKRQALYGYDPPKDPKRPKMETCDCCPCFGRRKKKNAKNGAVGEGMDNNDKELLMSHMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAAL LKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPMLYGYKEGKLKW LERFAYVNTTIYPFTSLALVAYCCLPAICLLTDKFIMPEISTFASLFFIGLFLSIFSTGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVL AGIDTNFTVTSKATDDDDFGELYAFKWTTLLIPPTTILIINLVGVVAGVSDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSV LLASIFSLLWVRIDPFVMKTRGPDTKQCGLNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	1.00	0.9682	C3H1,CYP98.1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	2.00	0.9587
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	2.44	0.9543	Pt-CESA2.1
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	2.64	0.9445
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	2.82	0.9494
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	3.00	0.9434
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	3.87	0.9372
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	5.00	0.9484	POPTRKOR2,KOR1.3
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	5.38	0.9218	BGAL9.1
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	6.92	0.9467

Compare expression of checked genes

Potri.018G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.