Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24060 278 / 2e-93 Translation initiation factor 3 protein (.1) AT4G30690 263 / 9e-88 Translation initiation factor 3 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G182000 [exp] 293 / 9e-100 AT2G24060 251 / 3e-83 Translation initiation factor 3 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035814 [exp] 299 / 1e-101 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1) Lus10036595 [exp] 298 / 2e-101 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1) Lus10032318 [exp] 45 / 3e-05 AT1G34360 142 / 4e-37 translation initiation factor 3 (IF-3) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00707 [poplar] [flax] IF3_C Translation initiation factor IF-3, C-terminal domain PF05198 [poplar] [flax] IF3_N Translation initiation factor IF-3, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G104000.2 pacid=42800627 polypeptide=Potri.018G104000.2.p locus=Potri.018G104000 ID=Potri.018G104000.2.v4.1 annot-version=v4.1 ATGGCTGGTATCACCAGCGCTAGCAGCAGCAGCTGTTTTCCGTTAGTAACCCGGACTACCACAACCAAAACGACACACTACGCGCTCTGTCTTTCTTCTC TCGATTCCAAGCTCTTCGGCCTCCGGCTTCACAACCCGAATCTCTCCAAACCGGACTCTCTCCCGTGCTCTTCTCCCAGCCCCGTCACCACTGCCCGTTT CGGCGGTCCACGATCCTATGACTCGCGGAGGCCGCGGAAGAGTGATTCCGATGATGACCAGGCTCTTAATATATCTAGCATTAGGTCAGCTACTGTGAGA CTCATTGATCAGCAACAGAATATGGTTGGAGTGGTAACTGTTCGTGATGCAATTCAAATGGCTGAAGATACCGAGCTTAATTTGGTGATAGTGTCTCCGG ATGCAGATCCTCCTGTTGTCAGAATAATGGATTACAACAAATTTAGATATGAACAGCAAAAGAAAAAGAGAGGACAGCAGAAGAAAAGTGCTGCAAGTCG CATGGATTTGAAGGAGCTTAAAATGGGTTACAATATCGACCAGCATGATTATGATGTGCGTTTAAGAGCTGCTCGGAAGTTTTTGAAAGATGGTGACAAG GTCAAGGTCATAGTGAACTTAAAAGGCCGTGAAAATGAGTTCAGAAATAATGCAATTGAGCTCTTAAGACGTTTCCAAAATGATGTTGGAGAGCTTGCCA CTGAGGAGAGCAAAAACTTTCGTGATAGGAATGCATTTATTACTCTGGTACCAAATAAAGCTCTTCTACAGAAAGCTCAGGAACCTCCCAAGAAAAAAGA CAAGTCAGCCGCAGATGAAGTATCAGCTGGTGTGTGA
AA sequence Show only first row Show all	>Potri.018G104000.2 pacid=42800627 polypeptide=Potri.018G104000.2.p locus=Potri.018G104000 ID=Potri.018G104000.2.v4.1 annot-version=v4.1 MAGITSASSSSCFPLVTRTTTTKTTHYALCLSSLDSKLFGLRLHNPNLSKPDSLPCSSPSPVTTARFGGPRSYDSRRPRKSDSDDDQALNISSIRSATVR LIDQQQNMVGVVTVRDAIQMAEDTELNLVIVSPDADPPVVRIMDYNKFRYEQQKKKRGQQKKSAASRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDK VKVIVNLKGRENEFRNNAIELLRRFQNDVGELATEESKNFRDRNAFITLVPNKALLQKAQEPPKKKDKSAADEVSAGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24060			Translation initiation factor ...		Potri.018G104000 [exp]	0	1
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.004G224500 [exp]	2.82	0.9566
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	4.35	0.9567	RBP29.2
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	9.32	0.9523
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	12.00	0.9512
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	13.07	0.9460
AT3G15110			unknown protein		Potri.011G097800 [exp]	15.65	0.9511
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	16.91	0.9404
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	18.76	0.9475
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.006G075200 [exp]	20.19	0.9358
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	22.58	0.9295

Compare expression of checked genes

Potri.018G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.