Plant FIBer expression Database

Potri.018G104400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G182400
[exp]
95 / 1e-25 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G104400.2 pacid=42801751 polypeptide=Potri.018G104400.2.p locus=Potri.018G104400 ID=Potri.018G104400.2.v4.1 annot-version=v4.1
ATGGATTCATCCAAATGCCAGTATTTCCTGTCTAAAATACCAGTGGACACCGACTGTCTAAGATACCAGTGCTTTATTTGGATTTTGCAAAGCATATGCC
AAAGGAACATGTTTAACAGCAGAAGAGCTGTTGTAGGTATCTTTCAACAGACGTCCATGTGCAGTGAGGGACATTTCACAGGGAGCTACTTTTCCTTAGC
AGACATGACTCAAATGAGGAGTGTATTCACTTTCCTGCTCTTCAGCCTCCTCTTGCTATCACACTCTCTTCCAAGTTCAGCTGTCAAGAGTCAATTTGAT
AAAGTTCCCACCAAATCCCAACTGCCTCAGGGAAGACAAAATGGCCTGATCAATTCATTTCAGACTCCGAAGTTAGGAGTTCACATAAAAAAAAGGGCTC
GTTTTTATCCTCGTAGTGGTCGCAAATCGTCTGCTGTCCGAACCCAACTTCCTTCCAGCCATATAATTGGTTCAGTTCTCGCCTTCCTCAGTTTCTTCCT
GTTCTAA
AA sequence
>Potri.018G104400.2 pacid=42801751 polypeptide=Potri.018G104400.2.p locus=Potri.018G104400 ID=Potri.018G104400.2.v4.1 annot-version=v4.1
MDSSKCQYFLSKIPVDTDCLRYQCFIWILQSICQRNMFNSRRAVVGIFQQTSMCSEGHFTGSYFSLADMTQMRSVFTFLLFSLLLLSHSLPSSAVKSQFD
KVPTKSQLPQGRQNGLINSFQTPKLGVHIKKRARFYPRSGRKSSAVRTQLPSSHIIGSVLAFLSFFLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G104400
[exp]
0 1
AT3G14280 unknown protein Potri.001G163100
[exp]
1.73 0.8254
AT4G01440 nodulin MtN21 /EamA-like trans... Potri.002G182700
[exp]
5.00 0.8389
AT5G42146 unknown protein Potri.009G129301
[exp]
8.66 0.8182
Potri.019G032001
[exp]
13.03 0.8293
AT2G32990 ATGH9B8 glycosyl hydrolase 9B8 (.1) Potri.002G225200
[exp]
13.85 0.7540
AT1G02010 SEC1A secretory 1A (.1.2) Potri.014G069300
[exp]
16.43 0.7345 Pt-SEC1.1
AT4G24970 Histidine kinase-, DNA gyrase ... Potri.003G167201
[exp]
18.89 0.7620
AT5G42200 RING/U-box superfamily protein... Potri.002G017400
[exp]
24.57 0.8234
AT4G08300 nodulin MtN21 /EamA-like trans... Potri.005G176200
[exp]
34.11 0.8136
AT3G11050 ATFER2 ferritin 2 (.1) Potri.008G072700
[exp]
35.66 0.7196 PFE2.2

Potri.018G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.