Plant FIBer expression Database

Potri.018G104600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G104500
[exp]
81 / 6e-21 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035810
[exp]
47 / 2e-07 ND /
Lus10036593
[exp]
36 / 0.0006 ND /
PFAM info
Representative CDS sequence
>Potri.018G104600.1 pacid=42802259 polypeptide=Potri.018G104600.1.p locus=Potri.018G104600 ID=Potri.018G104600.1.v4.1 annot-version=v4.1
ATGAAGAGAAGTATGCTTGCATGGATTTTCTTCATGATTTGTTTTACGCTTCTTTCATATTATGCATGTGAAAGTTCTTTTACTCCTCGATTCAACAAGC
CACTGCAAAGGGAAAATCAAAATAAGATCAATGAAATGCATCTAGAAGCAGGAAGTTTACAAAGACGTGCAAGAGGAGTTTATGGTGGTGGAGATCTCCT
TCGTCCCCGTACCGGCCACCGGAATGGAGCAGGCTCGTTGCTGTTGAGACCCTCTTCATTCCTCTCCACCTTATCCAGACACGTTGCAGTTGGATTGATC
ATCTTTTTTTTCTTAATTTTTTGA
AA sequence
>Potri.018G104600.1 pacid=42802259 polypeptide=Potri.018G104600.1.p locus=Potri.018G104600 ID=Potri.018G104600.1.v4.1 annot-version=v4.1
MKRSMLAWIFFMICFTLLSYYACESSFTPRFNKPLQRENQNKINEMHLEAGSLQRRARGVYGGGDLLRPRTGHRNGAGSLLLRPSSFLSTLSRHVAVGLI
IFFFLIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G104600
[exp]
0 1
AT2G30480 unknown protein Potri.013G157800
[exp]
8.18 0.8087
AT4G14180 ATPRD1 putative recombination initiat... Potri.002G232700
[exp]
11.04 0.7947
AT5G55250 AtIAMT1, IAMT1 IAA carboxylmethyltransferase ... Potri.001G359000
[exp]
15.87 0.7512 IAMT1
AT2G03500 GARP Homeodomain-like superfamily p... Potri.004G144800
[exp]
29.93 0.7473
AT3G09110 Protein of unknown function (D... Potri.010G210500
[exp]
40.12 0.7716
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
47.13 0.7656
AT1G13790 FDM4 factor of DNA methylation 4, X... Potri.001G240666
[exp]
48.98 0.6943
AT1G76740 unknown protein Potri.002G066450
[exp]
53.38 0.7185
AT3G06130 Heavy metal transport/detoxifi... Potri.013G025300
[exp]
68.22 0.7118
AT5G58630 unknown protein Potri.009G046900
[exp]
76.68 0.7153

Potri.018G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.