Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKIP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57900 377 / 6e-132 SKIP1 SKP1 interacting partner 1 (.1) AT4G30640 327 / 6e-112 RNI-like superfamily protein (.1) AT4G05497 102 / 1e-25 RNI-like superfamily protein (.1) AT4G05460 96 / 1e-22 RNI-like superfamily protein (.1) AT4G05475 82 / 1e-17 RNI-like superfamily protein (.1) AT4G05470 82 / 2e-17 RNI-like superfamily protein (.1) AT4G03630 79 / 5e-17 RNI-like superfamily protein (.1) AT5G52480 76 / 7e-16 RNI-like superfamily protein (.1.2) AT4G15475 67 / 4e-12 F-box/RNI-like superfamily protein (.1) AT4G05490 65 / 1e-11 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099100 [exp] 85 / 1e-18 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.013G013100 [exp] 61 / 5e-10 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 60 / 9e-10 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 58 / 3e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.017G056400 [exp] 55 / 2e-08 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.006G068500 [exp] 55 / 3e-08 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G142200 [exp] 54 / 5e-08 AT2G06040 544 / 0.0 unknown protein Potri.006G195800 [exp] 53 / 9e-08 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 53 / 1e-07 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034452 [exp] 439 / 4e-156 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10019104 [exp] 438 / 7e-156 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10038528 [exp] 103 / 5e-25 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10023277 [exp] 99 / 3e-23 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10036483 [exp] 81 / 6e-17 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 80 / 9e-17 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10001264 [exp] 65 / 2e-11 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10008704 [exp] 62 / 4e-11 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10012214 [exp] 63 / 1e-10 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 63 / 1e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.018G104900.1 pacid=42801774 polypeptide=Potri.018G104900.1.p locus=Potri.018G104900 ID=Potri.018G104900.1.v4.1 annot-version=v4.1 ATGAGACGTAACGAAGATACAGACGTGGTAGAGACGGATGCCGAGTCAGGACTCATCGCCGACTGGGCCGAGTTAACTTACGAGTGCTTAATCATCATCC TCTCTCGACTCACCTTTGAGCACCGATGGCGCGGTCCCATGCTCGTGTGCAAAGGTTGGCTTATCGCCTGCAAGGATCCATCTCTCAACACACTATTCGA TCTGGACACTCAATTCGACTCGGTCATTGAATCACCTCGGTGGTGGACCCCTGATTTCGAGAGAAAAATCGATTCAATGCTCGTTTCCGTCATCACTTTT AGTGACGGATCCCTGACCGAGATCCGCACCCAGCACTGCTCCGATCTCTCAGTCACTTTCGCCGCCGAAAGGTGCTCAAATCTTCAAGTGCTTTCAATAA AAAGCTGCCGGAATGTGACTGATGCATCAATGGCTCAAATTGCTTACAAGTGCGCAAAGCTTAAAGAGCTTGATATAAGTTATTGCTTTGAAATATCACA CGAATCTTTGGTTATGATGGGTAGAAACTGCCCGAATCTTAGGGTTTTAAAGCGGAACCAAATGAATTGGTTAGATGCCTCCGAACACGTAGGGATTGTG CCCGATAGTTATTTAAATACTTGCCCTCAAGATGGAGATTGCGAGGCTGGTGCAATTGGGAAATACATGCCCAATTTGGTGCACCTTGAGTTGAGGTTTT CGAAAATGTCTGCAAAAGGATTGGTGTCGATTTGTGAAGGGTGTTTGAATCTTGAGTATTTGGATTTGTCTGGGTGTGCCAATTTGACGAGTCGGGATAT TGTTAAGGCGACTTTGGGGTTGAAGAATTTGAAGGAGATTAAGAAACCGAATTTTTATATTCCGAGGTCGGTTTTCCACACTGAAAGATATGGACATTGG AGGTTGTATGATGAGCGGTTTCAGACGGATATCTTCCGCATTTGA
AA sequence Show only first row Show all	>Potri.018G104900.1 pacid=42801774 polypeptide=Potri.018G104900.1.p locus=Potri.018G104900 ID=Potri.018G104900.1.v4.1 annot-version=v4.1 MRRNEDTDVVETDAESGLIADWAELTYECLIIILSRLTFEHRWRGPMLVCKGWLIACKDPSLNTLFDLDTQFDSVIESPRWWTPDFERKIDSMLVSVITF SDGSLTEIRTQHCSDLSVTFAAERCSNLQVLSIKSCRNVTDASMAQIAYKCAKLKELDISYCFEISHESLVMMGRNCPNLRVLKRNQMNWLDASEHVGIV PDSYLNTCPQDGDCEAGAIGKYMPNLVHLELRFSKMSAKGLVSICEGCLNLEYLDLSGCANLTSRDIVKATLGLKNLKEIKKPNFYIPRSVFHTERYGHW RLYDERFQTDIFRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Potri.018G104900 [exp]	0	1	Pt-SKIP1.1
AT1G80570			RNI-like superfamily protein (...		Potri.017G053400 [exp]	4.00	0.8268
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	5.74	0.8385
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G418500 [exp]	8.60	0.7438
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	8.66	0.8552
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	10.34	0.7290
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	13.63	0.8518
AT2G31945			unknown protein		Potri.009G024300 [exp]	30.74	0.8027
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	33.46	0.8159
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.009G133500 [exp]	33.74	0.7830
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	35.77	0.8096

Compare expression of checked genes

Potri.018G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.