Plant FIBer expression Database

Potri.018G105401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G183101
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G105401.1 pacid=42801496 polypeptide=Potri.018G105401.1.p locus=Potri.018G105401 ID=Potri.018G105401.1.v4.1 annot-version=v4.1
ATGTTGTCCTCCAACCAAACCCACCTTACCTCACAAACCCATTATTCAGTATGCCTGAAATACCCTTCTGCAACCCCCCAAAAAAATCCAATCTTCATCA
CTGTCTCAAGTCTCAACTCTCTAAAGAAAACATTTTTCTCACCGAATTATGTGGGCTTCTTTGGGTTTTCTTTGTCTTGGTCAGAGTTTCACAGAGAGAA
CAGGAAAGCAAGAACCTTCCCATCTCTCTCTCTCATCTTTCTTTATCACCCTCCTCGATCTCATCTTGTCCATCACTCTCTCTTTCTTTCTTCTCATTAT
AATTCTCTCTTAGCCTTCTTCCTACCTATATTTCCTCTCCCTTGCCCTTCTTTCTCCTTCCCATTCCTCTCCTCCTGTCCATAA
AA sequence
>Potri.018G105401.1 pacid=42801496 polypeptide=Potri.018G105401.1.p locus=Potri.018G105401 ID=Potri.018G105401.1.v4.1 annot-version=v4.1
MLSSNQTHLTSQTHYSVCLKYPSATPQKNPIFITVSSLNSLKKTFFSPNYVGFFGFSLSWSEFHRENRKARTFPSLSLIFLYHPPRSHLVHHSLFLSSHY
NSLLAFFLPIFPLPCPSFSFPFLSSCP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G105401
[exp]
0 1
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
16.61 0.7142
AT1G61210 DWA3 DWD hypersensitive to ABA 3, T... Potri.011G045500
[exp]
27.74 0.6295
AT2G38440 ITB1, DIS3, SCA... IRREGULAR TRICHOME BRANCH1, S... Potri.006G105800
[exp]
38.45 0.6687 WAVE4.1
AT1G67140 SWEETIE SWEETIE, HEAT repeat-containin... Potri.004G101250
[exp]
39.19 0.6746
AT5G07740 actin binding (.1) Potri.012G067900
[exp]
66.45 0.6556
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
74.31 0.6654
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Potri.018G072600
[exp]
75.97 0.6520
AT1G03160 FZL FZO-like (.1.2) Potri.002G053332
[exp]
78.01 0.6547
AT1G31870 unknown protein Potri.001G147100
[exp]
79.56 0.6560
AT3G07660 Kinase-related protein of unkn... Potri.001G370900
[exp]
90.46 0.6162

Potri.018G105401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.