Plant FIBer expression Database

Potri.018G105600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24020 240 / 1e-81 Uncharacterised BCR, YbaB family COG0718 (.1.2)
AT4G30620 235 / 8e-80 Uncharacterised BCR, YbaB family COG0718 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015490
[exp]
207 / 3e-69 AT2G24020 200 / 4e-67 Uncharacterised BCR, YbaB family COG0718 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02575 YbaB_DNA_bd YbaB/EbfC DNA-binding family
Representative CDS sequence
>Potri.018G105600.2 pacid=42800816 polypeptide=Potri.018G105600.2.p locus=Potri.018G105600 ID=Potri.018G105600.2.v4.1 annot-version=v4.1
ATGGCTTCGACTACTGCTGTAACTGCTCAGGTCACAAACCTTAACGGGCTAGGCGACTGGAAAAGGCCTTTCCCTGCATCACTTCCTTTAGGTAACCTGA
ATTTAAATGCAAATGTTGTTGGCAAGCAGCTGTTGTCTTGGTCTGGCAAGCAGAAATCTGAGCGAAATTACAGATCTTTCCGTGTGATTGGTTTATTTGG
AGGGAAAAAGGAGAATAGCGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATATTTGGAAACATGCAGAACTTATACGAGACTGTAAAAAAGGCACAA
ATGGTTGTCCAAGTTGAGGCAGTTCGGGTGCAGAAAGAACTTGCTTCAGCAGAGTTTGATGGTTACTGTGAAGGTGAGCTAATCAAGGTAACACTAACTG
GCAACCAGCAACCTGTACGGACAGAAATAACTGAAGCTGCAATGGAATTAGGTGCAGAAAAACTTTCACTTTTAGTTACCGAGGCATACAAGGATGCTCA
CCAAAAGAGTGTCCAGGCCATGAAAGAAAGGATGAACGACCTTGCCCAAAGCCTAGGAATGCCACCAGGAGTCGGTGAGGGGTTAAAGTGA
AA sequence
>Potri.018G105600.2 pacid=42800816 polypeptide=Potri.018G105600.2.p locus=Potri.018G105600 ID=Potri.018G105600.2.v4.1 annot-version=v4.1
MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSFRVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQ
MVVQVEAVRVQKELASAEFDGYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMNDLAQSLGMPPGVGEGLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24020 Uncharacterised BCR, YbaB fami... Potri.018G105600
[exp]
0 1
AT4G34412 unknown protein Potri.004G141400
[exp]
3.46 0.9351
AT5G17560 BolA-like family protein (.1) Potri.013G074100
[exp]
5.09 0.9338
AT5G16660 unknown protein Potri.013G078100
[exp]
5.47 0.9478
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
5.47 0.9553
AT3G19220 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U ME... Potri.009G102400
[exp]
6.00 0.9477
AT4G34620 SSR16 small subunit ribosomal protei... Potri.013G128200
[exp]
9.89 0.9526
AT4G13430 ATLEUC1, IIL1 isopropyl malate isomerase lar... Potri.010G065100
[exp]
15.87 0.9390
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Potri.006G246500
[exp]
22.91 0.9420
AT4G33460 ABCI10, ATNAP13... embryo defective 2751, ATP-bin... Potri.005G062800
[exp]
25.21 0.8891
AT2G31450 ATNTH1 DNA glycosylase superfamily pr... Potri.007G127600
[exp]
26.90 0.8940

Potri.018G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.