Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30610 710 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 626 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 622 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 594 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35780 530 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 524 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT4G30810 474 / 4e-165 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 472 / 4e-164 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G35770 459 / 1e-159 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G63470 457 / 3e-158 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183200 [exp] 823 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 609 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 607 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.010G220100 [exp] 549 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 545 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 505 / 2e-177 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 497 / 3e-174 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 487 / 3e-170 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.005G091700 [exp] 473 / 2e-164 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015489 [exp] 721 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 712 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 596 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 533 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 532 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 482 / 2e-167 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10010190 [exp] 454 / 4e-157 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 451 / 6e-156 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 427 / 6e-147 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010191 [exp] 426 / 4e-146 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.018G105700.1 pacid=42800593 polypeptide=Potri.018G105700.1.p locus=Potri.018G105700 ID=Potri.018G105700.1.v4.1 annot-version=v4.1 ATGGCAGTTCAAAGCAAAACCACCCATCTCTTGATCTTGTGCCTACTTCTCATTTCGTCACTCACCACAGCCCTTCTTGCTTTGACTGAACAGCAAGAAC TGGATCGAATCTCGTCTCTCCTTGGTCAACCACCAGTCACATTTTCACAGTTTTCTGGCTATGTTACTGTCAATGAGAAACATGGGCGTGCACTCTTTTA CTGGTTGACAGAAGCTACAACGACTCCTGACAAGAAACCTCTTGTTCTTTGGCTCAATGGAGGACCAGGTTGTTCATCGGTGGCATATGGAGCATCGGAA GAAATCGGGCCATTTCGGATAAATAGAACTGGTTCATCTCTTTATATGAACAAATATTCTTGGAATAGAGAAGCAAATATTTTGTTCCTGGAATCACCAG CTGGTGTGGGATTCTCATACACAAACACAAGCTCTAATCTTAAAGATTCTGGAGACAAAAGGACAGCTCAGGATGCTCTAGTTTTTGTCATTAGGTGGAT GTCAAGATTTCCTCAATACAAATATAGAGAGCTCTACATTGCTGGTGAAAGTTATGCAGGGCATTATGTCCCCCAGTTGGCAAAGAAAATCCATGATTAC AATAAAGCGTATCCACGTCCCATCATCAATCTTAAAGGATTCATTGTAGGAAATGCAGTCACAGATATCTACTATGACAGCATTGGAACTATTGCATTTT GGTGGACACATTCAATGATATCGGATCAGACTTACCGAGAAATTCTTGATAATTGCAATTTCACAGATGACACAACCTCAAAAAAATGTGATGATGCTGT GAATTATGCAATATACCATGAATTTGGGAATATTGATCCATACAGCATTTATACACCATCTTGCATGCAACTTCCAAATAGTACTATGAGGCTGAAGAAT ACTCTGTTCCGTAGAAGGGTTTCTGGTTATGATCCATGTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGAAGTGCAAGAGGCAATGCATGCTA ATGTTACCGGAATTCCTTACAAATGGACTGCTTGCAGTAATGTGCTGAATAAAAACTGGAAGGATTCTGAATCCTCCATGTTACCCATATACAAGGAGCT GATTGCGGCTGGTTTAAGAATCTGGGTTTTCAGCGGTGACACAGATTCAGTGGTTCCGGTGACTGCCACTAGGTTTTCCCTTAGTCACCTCGATCTCCCT GTTAAAACTAGGTGGTACCCTTGGTACTCAGGCGACCAGGTTGGAGGATGGACAGAAGTTTACAAGGGGCTGACCTTTGCAACTGTGAGAGGAGCAGGCC ATGAAGTTCCATTATTTCAACCAGAAAGAGCTTTCATTCTTTTCAGATCATTCTTGGGTGGGAAAGAACTACCCAAATCTTGA
AA sequence Show only first row Show all	>Potri.018G105700.1 pacid=42800593 polypeptide=Potri.018G105700.1.p locus=Potri.018G105700 ID=Potri.018G105700.1.v4.1 annot-version=v4.1 MAVQSKTTHLLILCLLLISSLTTALLALTEQQELDRISSLLGQPPVTFSQFSGYVTVNEKHGRALFYWLTEATTTPDKKPLVLWLNGGPGCSSVAYGASE EIGPFRINRTGSSLYMNKYSWNREANILFLESPAGVGFSYTNTSSNLKDSGDKRTAQDALVFVIRWMSRFPQYKYRELYIAGESYAGHYVPQLAKKIHDY NKAYPRPIINLKGFIVGNAVTDIYYDSIGTIAFWWTHSMISDQTYREILDNCNFTDDTTSKKCDDAVNYAIYHEFGNIDPYSIYTPSCMQLPNSTMRLKN TLFRRRVSGYDPCTENYAEKYYNRPEVQEAMHANVTGIPYKWTACSNVLNKNWKDSESSMLPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLSHLDLP VKTRWYPWYSGDQVGGWTEVYKGLTFATVRGAGHEVPLFQPERAFILFRSFLGGKELPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Potri.018G105700 [exp]	0	1	BRS1.1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.003G093700 [exp]	1.00	0.9850
					Potri.003G082300 [exp]	2.00	0.9830
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.010G160600 [exp]	4.24	0.9781	CLE9.1
					Potri.009G008300 [exp]	5.91	0.9794
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.008G170300 [exp]	6.00	0.9754
AT3G48675			Protein of unknown function (D...		Potri.006G062100 [exp]	6.48	0.9829
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	7.21	0.9825
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.009G096800 [exp]	9.16	0.9737	SEP1.2
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010700 [exp]	13.19	0.9801
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.015G099900 [exp]	14.28	0.9668

Compare expression of checked genes

Potri.018G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.