Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CNGC5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57940 1030 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 1024 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 1016 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 930 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 902 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 717 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 685 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 660 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G24610 655 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 647 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183000 [exp] 954 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 935 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 717 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 716 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 689 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 681 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G097600 [exp] 674 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.009G010700 [exp] 649 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G009200 [exp] 629 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036260 [exp] 1078 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 1056 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 933 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 915 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10019014 [exp] 718 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 696 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 669 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10023203 [exp] 655 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10021461 [exp] 654 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10019983 [exp] 654 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.018G106100.1 pacid=42800562 polypeptide=Potri.018G106100.1.p locus=Potri.018G106100 ID=Potri.018G106100.1.v4.1 annot-version=v4.1 ATGATGTTTGATTGTGGTTCGAAATCGCAATATCTAGGTGGTGGTCAGAGAGACAAGTTTGTCAGATTGGATGACTTGGATTCTAGGCTATCATCGCCTT CCAGTGCAGGAGTGAGAAGTTGTGGGTTTGGTATTGAAGGATTTAGACGTACTGGTCAAGGAGCAGATACACCATCGAGATCTTTCAAGAGAGGAATCAG AAAAGGGTCCGAGGGACTCAAGTCTATTGGTCGGTCACTTAGATTCGGGGTCCCACGGGGAGTGTTTCCAGAGGATCTTAAAGTGTCAGAAAAGAAGATT TTTGATCCTCAAGATAAATTCCTCCAGTTCTGCAATAAACTGTTTCTCATATCATGTATTCTGGCGGTTTCTGTGGACCCTCTATTTTTTTATCTTCCAG TTTTTAGTGATTCAGAGACCTGTCTTGGAATAGATCGCAAATTAGCAACTATAGCAACAACTTTGCGAACAATTGTTGATGCTTTCTATCTTATACGCAT GGCTCTCCAGTTCCGAACAGCTTACATTGCACCGTCTTCTCGGGTATTTGGGCGAGGTGAACTTGTTATAGATCCCACACAAATAGCCAAGCGGTACATG CAGAGATATTTCATCATTGATTTGCTTTCTGTCCTTCCCCTACCACAGATTGTGGTTTGGAGGTTTCTTCTGAGGTCAAAAGGTTCAGATGTCTTGGCTA CAAAACAGGCCTTGCTTTACATCATCCTGCTTCAATATATTCCTAGATTCTTTCGAATCTTGCCCTTAACATCAGAACTAAAAAGGACAGCAGGTGTCTT TGCCGAAACAGCCTGGGCTGGAGCTGCATATTATTTGCTATTATACATGCTTGCTAGTCATATAGTTGGTTCGTTCTGGTACTTGTTAGCAGTAGAACGA AATGATGCATGCTGGCAGAAGAATTGTACTGCTGCTGTAAAATGCAAAAAAGATTTCTTGTACTGTGGCAATCGGGGTATGGAAGATTATCGTGCCTGGG ACAGCTCTATTCTTAATTCAAATTGTTCAGCAGATGATAATAACCAATTTGATTATGGAATCTACTCAAATGCTTTGTCTTCTGGCATTGTTTCATCTAA GAAGTTCGTTTCCAAGTACTGTTTCTGTTTATGGTGGGGGCTTCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACCAGCACCTATCCTGGAGAGGTT ATATTCTCCATAGCGCTAGCCATTTTTGGACTCATTCTCTTTGCTCTTCTGATTGGCAACATGCAGACCTATCTTCAGTCACTCACTATTCGGTTAGAAG AAATGAGAGTCAAAAGGCGCGACTCAGAACAGTGGATGCACCATCGCCTACTTCCTCAAGACCTTAGGGAACGGGTAAGACGCTATGACCAGTACAAATG GTTGGAAACACGTGGGGTGGATGAAGAGAATTTGGTACAGAGCCTTCCAAAGGATCTTAGGAGAGATATCAAACGACATCTTTGTTTGGCTTTGGTGAGG AGGGTTCCTTTATTTGAGAACATGGATGAGAGGTTGCTTGATGCCATTTGCGAGCGGCTGAAACCATGTCTATTTACAGAGAGCACATACATAGTTCGAG AAGGAGATCCAGTTGATGAAATGCTTTTTATCATTCGTGGTCGCCTGGAGAGTGTGACTACAGATGGTGGGAGAAGTGGTTTCTTCAACCGCAGTTTACT CAGGGAAGGAGATTTTTGTGGGGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCCGGTGCCAACCTTCCCTCTTCTACTCGGACAGTGAAGGCACTA AGAGAGGTTGAGGCCTTTGCACTCATAGCTGAAGAGTTGAAATTTGTAGCCAGTCAGTTCAGGCGCCTTCATAGCAGACAAGTTCAGCACACCTTCCGAT TTTATTCGCAGCAGTGGAGGACTTGGGCTGCGTGCTTTATTCAAGCTGCATGGCGACGTTATTCCAAGAGGAAGAGTCTGGAGCTTCGTCGGAAGGAAGA AGAGGATGAAGCAGAGGCAGATGGTAACCGTAGCAATATGAGAGGAGGAGGTTCATATAGTATTGGGGCTACCTTTTTGGCAACCAGGTTTGCGGCAAAT GCTCTCCGTGGCGTTCATCGGAATCGGAATGCCAAGACTGCCAGGGAATTAGTGAAACTACAGAAACCCCCAGAACCTGATTTTACTGCAGATGATGCAG ATTGA
AA sequence Show only first row Show all	>Potri.018G106100.1 pacid=42800562 polypeptide=Potri.018G106100.1.p locus=Potri.018G106100 ID=Potri.018G106100.1.v4.1 annot-version=v4.1 MMFDCGSKSQYLGGGQRDKFVRLDDLDSRLSSPSSAGVRSCGFGIEGFRRTGQGADTPSRSFKRGIRKGSEGLKSIGRSLRFGVPRGVFPEDLKVSEKKI FDPQDKFLQFCNKLFLISCILAVSVDPLFFYLPVFSDSETCLGIDRKLATIATTLRTIVDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPTQIAKRYM QRYFIIDLLSVLPLPQIVVWRFLLRSKGSDVLATKQALLYIILLQYIPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGSFWYLLAVER NDACWQKNCTAAVKCKKDFLYCGNRGMEDYRAWDSSILNSNCSADDNNQFDYGIYSNALSSGIVSSKKFVSKYCFCLWWGLQNLSTLGQGLETSTYPGEV IFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVR RVPLFENMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLREGDFCGEELLTWALDPKSGANLPSSTRTVKAL REVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSLELRRKEEEDEAEADGNRSNMRGGGSYSIGATFLATRFAAN ALRGVHRNRNAKTARELVKLQKPPEPDFTADDAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57940		ATCNGC5	cyclic nucleotide gated channe...		Potri.018G106100 [exp]	0	1	CNGC5.1
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.002G059100 [exp]	5.19	0.7474
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	6.24	0.8111
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	7.93	0.8349
AT2G46900			unknown protein		Potri.002G183500 [exp]	12.36	0.7945
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	12.48	0.8056
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	14.96	0.8158	TTN8.2
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	17.46	0.8039
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	17.83	0.7992
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	21.33	0.7977
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	27.71	0.7962

Compare expression of checked genes

Potri.018G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.