Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57930 510 / 8e-180 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 301 / 5e-98 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 263 / 1e-83 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 192 / 4e-57 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183900 [exp] 713 / 0 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 295 / 1e-95 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 190 / 2e-56 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Potri.015G106200 [exp] 166 / 2e-46 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019959 [exp] 489 / 4e-171 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 280 / 7e-90 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 279 / 2e-89 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 263 / 7e-84 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 249 / 2e-78 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 258 / 1e-77 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004105 [exp] 246 / 2e-77 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041934 [exp] 143 / 8e-41 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 119 / 7e-30 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10027182 [exp] 115 / 6e-29 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [poplar] [flax] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.018G106400.1 pacid=42801750 polypeptide=Potri.018G106400.1.p locus=Potri.018G106400 ID=Potri.018G106400.1.v4.1 annot-version=v4.1 ATGATAATTACCTCTTCAGTTGCAACGTGGAAAGACTCTGGGTCTTCTTCTAACTACCCTTTATGTGTCATGGCTTTGTATCATTCTAAATTGAGGGCTT CCTCTCTCAAAATGGAGCCTTTCACTGTTTCTTATGACCAGAGATCAGAGTTCCTCAAACTCAGTTACCTCCATTCTTTTCAGCATAGCAATGTAAAAGT TAGGCATTCATTAAATCCTAGAATAACACGAACAAGGTTGCATGAACCACACGCACTGGTTATTTCAAATGAACATCCTCAAAATGCTGATTTCCCTCGG AATTATTCGAGAAAGGAGAAGAAGCCCTTTCCAATACCCATAGTTGAGTTGAGACGAGCTGCAAGGGAGAGGCTCAAGAAGAGTAAAGGCCAACCTAAAG GACGGGTGCCACCTCCAAAGAAAGGGTTGATCGTTCAAAGCCTTTTACCACTTGCTTATGATGTGTTCAATGCAAGGATCACATTGATTAACAATCTCAG GAAACTGTTAAAAGTGGTTCCCGTGCATGCATGTGGGTGGTGTGATGAAATCCATGTGGGACTGGAAGGACATCCATTCAAGTCGTGTAAAGGCAAACGT GCTACCCTCCGCAATGGCCTTCATCAGTGGACAAATGCAGCCATTGAAGATGTACTTGTGCCAGTAGAAGCCTACCACCTTTACGACCGCCTTGGAAAAC GAATTACTCATGAGGAGAGATTTTCAATCCTCCAAATTCCTGCAGTAATGGAGCTCTGTATCCAAGCTGGAGTTCACATTCCTGAATATCCAACAAAAAG GAGGAGAAAACCAATTATTCGCATCGGAAAAAGGGAATTTGCTGATGCAGATGAAAGTGATCTGCCAGAACCTCTCCTAGAGGTTCCTCTAAAGCCATTA TTAACCGAAATATCCATCTCAGAAGCAGTAGCCCCAGCTAATGAAGAAGAAAAAACCTTGCTTGCTGAGGAAACACTACGAGCATGGGAAAAGATGAGGA AAGGAGCCAAGAGGTTAATGCAGATGTACCGTGTGAGAGCTTGTGGATATTGCCCAGAGGTGCATGTGGGACCTAGTGGGCATAAGGCACAGAACTGTGG GGCCCACAAGCACCAACAACGGAATGGACAGCATGGTTGGCAGTCTGCAGTGCTCGATGACTTGATACCGCCAAGATATGTGTGGCATGTTCCTGATGTG GTTGGGCTGCCATTGCGAAGGGAGCTGAGGAATTTCTATGGACAAGCCCCTGCTGTTGTGGAAATATGCTTTCAGGCTGGTGCTGCTGTACCAGACCAAT ACAAATCAACCATGAGATTGGATATTGGGATCCCTTCCAGTGTTAAAGAAGCTGAAATGGCTGTTTAA
AA sequence Show only first row Show all	>Potri.018G106400.1 pacid=42801750 polypeptide=Potri.018G106400.1.p locus=Potri.018G106400 ID=Potri.018G106400.1.v4.1 annot-version=v4.1 MIITSSVATWKDSGSSSNYPLCVMALYHSKLRASSLKMEPFTVSYDQRSEFLKLSYLHSFQHSNVKVRHSLNPRITRTRLHEPHALVISNEHPQNADFPR NYSRKEKKPFPIPIVELRRAARERLKKSKGQPKGRVPPPKKGLIVQSLLPLAYDVFNARITLINNLRKLLKVVPVHACGWCDEIHVGLEGHPFKSCKGKR ATLRNGLHQWTNAAIEDVLVPVEAYHLYDRLGKRITHEERFSILQIPAVMELCIQAGVHIPEYPTKRRRKPIIRIGKREFADADESDLPEPLLEVPLKPL LTEISISEAVAPANEEEKTLLAEETLRAWEKMRKGAKRLMQMYRVRACGYCPEVHVGPSGHKAQNCGAHKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDV VGLPLRRELRNFYGQAPAVVEICFQAGAAVPDQYKSTMRLDIGIPSSVKEAEMAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.018G106400 [exp]	0	1
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Potri.013G064700 [exp]	1.73	0.9740
AT3G10840			alpha/beta-Hydrolases superfam...		Potri.013G092900 [exp]	3.16	0.9495
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.008G149100 [exp]	3.16	0.9584
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	8.30	0.9583
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	13.41	0.9516
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	16.43	0.9450
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	19.79	0.9476
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.002G146200 [exp]	20.12	0.9291	PAG1.4
AT1G63610			unknown protein		Potri.005G250000 [exp]	21.63	0.9155
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	21.90	0.9459

Compare expression of checked genes

Potri.018G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.