Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30030 150 / 3e-41 Eukaryotic aspartyl protease family protein (.1) AT2G23945 132 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT4G30040 112 / 2e-27 Eukaryotic aspartyl protease family protein (.1) AT5G33340 92 / 2e-20 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 90 / 2e-19 Eukaryotic aspartyl protease family protein (.1) AT2G35615 84 / 2e-17 Eukaryotic aspartyl protease family protein (.1) AT2G28040 78 / 1e-15 Eukaryotic aspartyl protease family protein (.1) AT2G28220 78 / 2e-15 Eukaryotic aspartyl protease family protein (.1) AT2G28030 77 / 2e-15 Eukaryotic aspartyl protease family protein (.1) AT3G25700 76 / 5e-15 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 279 / 2e-90 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 97 / 5e-22 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 91 / 8e-20 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 75 / 2e-14 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 72 / 1e-13 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 69 / 1e-12 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 68 / 2e-12 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 68 / 3e-12 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 67 / 6e-12 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015486 [exp] 197 / 5e-58 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10015487 [exp] 177 / 2e-51 AT2G23945 214 / 7e-65 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 169 / 5e-48 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 168 / 5e-48 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 154 / 9e-43 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 153 / 3e-42 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 144 / 7e-39 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 122 / 7e-31 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 121 / 1e-30 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10007053 [exp] 117 / 1e-30 AT4G30030 212 / 3e-66 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G106500.2 pacid=42800684 polypeptide=Potri.018G106500.2.p locus=Potri.018G106500 ID=Potri.018G106500.2.v4.1 annot-version=v4.1 ATGGCAGCAATAGATATTGCAATCCTGTTTGTAGCTTTCACAAGTCATTTTACCCTAACCATGAGCACCACCATGGTTGCACTTGCACCTGCCATCCCCA AACCTAAGCGATTGGTCACCAAACTAATTCATCGCGACTCCATCTTTTCTCCCCGTTATAATGCTAATGGCACCATTGCTGATCGTGCAAGACGTGCTAT GGAAACTTCAATTGCGCGTTTTGTTCAGGTGTCCGGACTAGTCTCGGATAGCCATGGCATTCGAACCACTCTTCTCCTTAGCCAGCCCAGTGAACTATTC TACATAAATTTTTCTATCGGCCATCCACCACTTCCACAGCTAGCAATCATGGACAGTGGCAGTAGTTTTCTATGGATCAAGTGTCTTCCTTGCAGTCCTT GTTCAAGCAAATCACCTATTTCAATTTTTGATCCTAGGAAGTCTCTCACTTATTCTAGCATGTCATGCAGGAGATATAGGTGTAACCATTCCAAATGCAA CTCCTATAATGAATGTACTTACAATACAACATATGTTCGAGGTCCTGGATCGACCGGGATCTATGTTTTTGAACAACTTTCCTTCGAGACGATAGACGAC ACGAAGATTGTGGTGCCAAGGGTACTTTTGGGGTGTGGTCGAAATCTTGAAGTTGATAAAGGTCAATACAATGGAGTATTTGGACTTGGAGTTGGTAGAG AGACATCTTTGATAACTCAATTAGGTTCTCAATTCTCCTACTGCGTTGCCATGGTTGATAATGGAGTGATCCTTGATTCAGGAACTGCATATACTTGGCT AGCCCAAGATGCATATAATGCACTTAGCGAAGAAGTTCAAAGTCTCTTCAGAGAGATGTTACAACGGTACAAAGGCATGCCAAACCAACTGTGCTACATT GGGAGTGTGAGGGAGGATCTTAGTGGGTTCCCGGCAGTAACTTTCCATTTTGCGAATGGAGCACAATTAGTGCTCGACACCCAAAGTTCTAGTGCTGTCA ATGGAGACAACTCCAAAAATTTGTCCGTCATTGGAATGATGGCCCAACAGAACTACAATGTGGGTTACGACATTGGTCAAAACAAGTTGTACTTCCAAAG AATTGATTGTGAGCTTCTTAAGGACTAG
AA sequence Show only first row Show all	>Potri.018G106500.2 pacid=42800684 polypeptide=Potri.018G106500.2.p locus=Potri.018G106500 ID=Potri.018G106500.2.v4.1 annot-version=v4.1 MAAIDIAILFVAFTSHFTLTMSTTMVALAPAIPKPKRLVTKLIHRDSIFSPRYNANGTIADRARRAMETSIARFVQVSGLVSDSHGIRTTLLLSQPSELF YINFSIGHPPLPQLAIMDSGSSFLWIKCLPCSPCSSKSPISIFDPRKSLTYSSMSCRRYRCNHSKCNSYNECTYNTTYVRGPGSTGIYVFEQLSFETIDD TKIVVPRVLLGCGRNLEVDKGQYNGVFGLGVGRETSLITQLGSQFSYCVAMVDNGVILDSGTAYTWLAQDAYNALSEEVQSLFREMLQRYKGMPNQLCYI GSVREDLSGFPAVTFHFANGAQLVLDTQSSSAVNGDNSKNLSVIGMMAQQNYNVGYDIGQNKLYFQRIDCELLKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30030			Eukaryotic aspartyl protease f...		Potri.018G106500 [exp]	0	1
AT3G24130			Pectin lyase-like superfamily ...		Potri.017G054700 [exp]	9.69	0.9414
					Potri.009G020201 [exp]	11.83	0.9790
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.008G103800 [exp]	14.38	0.8843
AT5G05800			unknown protein		Potri.014G061450 [exp]	18.70	0.9790
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.002G191600 [exp]	18.97	0.9289	Pt-GOLS2.2
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	26.45	0.9787	GY4.2
					Potri.007G040950 [exp]	27.74	0.9787
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.012G106650 [exp]	28.72	0.8501
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	30.16	0.9786
					Potri.009G036600 [exp]	34.74	0.9778

Compare expression of checked genes

Potri.018G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.