Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24170 971 / 0 Endomembrane protein 70 protein family (.1) AT5G10840 967 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 964 / 0 Endomembrane protein 70 protein family (.1.2) AT3G13772 882 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 863 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 474 / 1e-159 Endomembrane protein 70 protein family (.1.2) AT4G12650 439 / 3e-146 Endomembrane protein 70 protein family (.1) AT2G01970 310 / 2e-97 Endomembrane protein 70 protein family (.1) AT1G14670 307 / 3e-96 Endomembrane protein 70 protein family (.1) AT5G37310 293 / 1e-90 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G184200 [exp] 1098 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 986 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 972 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 880 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 475 / 2e-160 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 473 / 2e-159 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 458 / 1e-153 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 454 / 6e-152 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 305 / 4e-95 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000222 [exp] 1025 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 981 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 978 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 911 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 907 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10027831 [exp] 484 / 7e-164 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 477 / 4e-161 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 465 / 2e-156 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 368 / 3e-119 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10042286 [exp] 295 / 1e-91 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.018G106600.1 pacid=42800409 polypeptide=Potri.018G106600.1.p locus=Potri.018G106600 ID=Potri.018G106600.1.v4.1 annot-version=v4.1 ATGGCGGGAGTTTCTCTCGCGCTCAGATTAGGAATCTCTTTCATGAAGTTTTCTTTGCTTTTGCTGTTATTAGCCTATCAATCCCATTCCTTCTATCTTC CTGGTGTCGCCCCTCAGGATTTCGTTACTGGGGCTGAGTTAAAGGTGAAAGTAAACAAACTGACTTCTACAAAAACACAACTTCCGTACTCATACTATTC CCTCCCATATTGTCCTCCAGATCGTATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTTCGTGGTGATCGTATTGAAAACTCTCCTTATGTGTTTCAA ATGAGAGAACCGCAACAGTGCCGAATTTTATGTCGTATAACCCTTGATGCAAAAACAGCAAAACAATTCAAGGAAAAGATTGATGATGATTACCGGGTCA ACATGATTTTGGATAATCTTCCACTTGTTGTGCCCATTACAAGGTTTGATCAGGAAAATGCGGTAGTGTATCAACATGGCTTCCAAGTTGGTCTTAAAGG GCAGTATGCTGGGAGCAAAGATCAAAAACATTTTATCCACAATCACTTGACATTTACTGTCAAATTTCACAAAGACTCTCAGTCAAATTTAGCCAGGATT GTTGGGTTTGAGGTCAAACCATTCAGCGTTAAACATGATTATGATGGTCAGTGGAAGAATGAGAATACACGACTAACAACCTGTGATCCCCACGCAAGGC GTGCAGTTACTAGCTCTGAATCTCCTCAAGTGATTGAGGATAAGAAGGATGTGATATTTACATATGATGTTGCATTTGAGGAAAGTGAAGTGAAGTGGGC TTCTCGGTGGGATACCTATCTTTTGATGGCTGATGATCAAATTCATTGGTTCTCAATTGTCAATTCTTTAATGATTGTTCTTTTTCTCTCGGGGATGGTG GCTATGATCATGTTGAGGACACTTTTTCGGGATATCTCAACGTACAACCAACTGGAGACCCAAGAAGAAGCCCAAGAGGAGACAGGATGGAAATTGGTCC ATGGGGATGCTTTCCGGCCTCCAACAAACTCAGACCTCCTCTGTGTCTATGCCGGGACAGGGGTTCAGTTTTTTGGGATGATTCTCGTTACTATGATATT TGCTGCACTTGGTTTCCTTTCTCCATCGAATCGAGGTGGGTTGATGACAGCCATGCTCCTTCTCTGGGTATTTATGGGTCTTTTTTCTGGATATGCATCA GCTCGTCTTTATAAGATGTTCAAGGGAACAGAATGGAAGAAAATTACTCTGAAAACGGCTTTCATGTTTCCTGCAACAATCTTTGCCATATTCTTTGTCT TGAATGCTCTAATATGGGGTGAGAAATCATCTGGGGCAGTGCCTTTTGGAACCATGTTTGCTCTGGTATTCTTATGGTTTGGCATTTCAGTTCCACTAGT CTTTGCTGGTAGTTATATTGGTTTCAAGAAGCCTGCAATTGAGGATCCAGTGAAAACGAATAAGATCCCAAGGCAGATTCCAGAACAGGCCTGGTACATG AAGCCAGTTTTCTCTATTCTAATTGGAGGCATTCTTCCATTTGGAGCTGTCTTTATCGAGCTCTTCTTCATCCTTACATCAATATGGCTGCATCAGTTCT ACTACATTTTTGGTTTCCTATTCATTGTCTTTGTCATCCTCATTGTCACTTGTGCCGAGATCACAATTGTGCTTTGCTACTTCCAGCTGTGCGGTGAGGA CTACCTTTGGTGGTGGAGGTCTTACCTGACATCAGGGTCCTCTGCAATTTACCTCTTCCTCTATGCTGCTTTCTACTTCTTCACGAAGCTTGATATTACA AAACCAGTGTCTGGGATCTTATACTTTGGCTACATGCTGATTGCCTCATATGCTTTCTTTGTGCTTACTGGCACAATTGGCTTCTATGCCTGCTTCTGGT TTACCAGGCTCATGTACTCATCAGTGAAGATTGATTAA
AA sequence Show only first row Show all	>Potri.018G106600.1 pacid=42800409 polypeptide=Potri.018G106600.1.p locus=Potri.018G106600 ID=Potri.018G106600.1.v4.1 annot-version=v4.1 MAGVSLALRLGISFMKFSLLLLLLAYQSHSFYLPGVAPQDFVTGAELKVKVNKLTSTKTQLPYSYYSLPYCPPDRIVDSAENLGEVLRGDRIENSPYVFQ MREPQQCRILCRITLDAKTAKQFKEKIDDDYRVNMILDNLPLVVPITRFDQENAVVYQHGFQVGLKGQYAGSKDQKHFIHNHLTFTVKFHKDSQSNLARI VGFEVKPFSVKHDYDGQWKNENTRLTTCDPHARRAVTSSESPQVIEDKKDVIFTYDVAFEESEVKWASRWDTYLLMADDQIHWFSIVNSLMIVLFLSGMV AMIMLRTLFRDISTYNQLETQEEAQEETGWKLVHGDAFRPPTNSDLLCVYAGTGVQFFGMILVTMIFAALGFLSPSNRGGLMTAMLLLWVFMGLFSGYAS ARLYKMFKGTEWKKITLKTAFMFPATIFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFAGSYIGFKKPAIEDPVKTNKIPRQIPEQAWYM KPVFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCGEDYLWWWRSYLTSGSSAIYLFLYAAFYFFTKLDIT KPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLMYSSVKID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	3.16	0.8775
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.008G035700 [exp]	4.47	0.8627
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	5.19	0.8314	ZIP6.2
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	7.21	0.8174
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	11.74	0.8586
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	13.60	0.8544	STGA1.2
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	14.49	0.8171
AT5G59830			unknown protein		Potri.009G027800 [exp]	15.49	0.8366
AT4G20325			unknown protein		Potri.006G280600 [exp]	18.33	0.8510
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	19.62	0.8414

Compare expression of checked genes

Potri.018G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.