Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30900 540 / 0 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G184300 [exp] 619 / 0 AT4G30900 550 / 0.0 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022154 [exp] 440 / 5e-157 AT4G30900 429 / 6e-153 DNAse I-like superfamily protein (.1.2) Lus10036262 [exp] 292 / 4e-100 AT4G30900 298 / 8e-103 DNAse I-like superfamily protein (.1.2) Lus10036263 [exp] 214 / 9e-70 AT4G30900 202 / 3e-65 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.018G106700.1 pacid=42801921 polypeptide=Potri.018G106700.1.p locus=Potri.018G106700 ID=Potri.018G106700.1.v4.1 annot-version=v4.1 ATGAAAAAAGGAAAAAAAATGAGTGTTTCCTTGACGGTGATGACCTTTAATCTTCATGATGATCAGGCTGAAGATAGTCCAAATTCATGGGAGAAGAGGA AGGATTTGTGTATTAGTGTCGTCACTAGTTATTCTCCTATGATTCTTTGTACTCAACAAGGTGTGAAAACACAGTTGGATTATCTTCAGCAGTGCTTGCC AGGTTATGGTCAATTTGGAATATCAAGAAAAGGATCTCAAGACAGCCTAGATGAACACTGTACTATCTTCTATGACAAGGAAAAAGTAGAGCTGCTAGAA GATGGAACATTTTGGCTATCAGAGTCGCCTTCTGTCCCAGGAAGCATGTCATGGGGTGCTGCAGTTCCATGTATTGCAACGTGGGCTATATTCCAATTGA AAGGGATTGAGCCCCCAGGCTTTTCATTGCAGATAGTGAATACAAACATGGACGAGTTTAGTCCTCGTGCACGTAGACGAAGTGCTTTACTCACATGGCA ACACATTGCATCCTTACCTCCTAGCTTACCAGTTGTGTATTGTGGAGGATTTAACACACACAAAGAATCAACTACAGGACGTTTTCTTCTTGGGAGATCA AGCGAGCATGGTGTAGTGGGAGATATGAGGGATACATGGCCCAATGCTCAAGTGAGGAAAAATGTTTCCCTCGTACACACTTTCCATGATTTCAAAGGTG ACAAGCAAGGAGCCCTTGAGTTCTTCAAGTTAATCTTGAGGGCACTCTGCCTCTGCTGGGACCGCCAAACACAGGATCTGCATGTAGATTGGATTCTTTT CAGAGGTAGATCTTTGATTCCTGTCCAGTGCGAAGTGGTGAATGATAATATAAACGGGCGCTATCCATCCTCACACTACCCTATATTTGCCGAGTTTATG CTTCCTCGTTCCGTGAGACTGCTTGAGCCACCTCTTACTGCAGAAGAAAATCCGCTTGCTGTCTGA
AA sequence Show only first row Show all	>Potri.018G106700.1 pacid=42801921 polypeptide=Potri.018G106700.1.p locus=Potri.018G106700 ID=Potri.018G106700.1.v4.1 annot-version=v4.1 MKKGKKMSVSLTVMTFNLHDDQAEDSPNSWEKRKDLCISVVTSYSPMILCTQQGVKTQLDYLQQCLPGYGQFGISRKGSQDSLDEHCTIFYDKEKVELLE DGTFWLSESPSVPGSMSWGAAVPCIATWAIFQLKGIEPPGFSLQIVNTNMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTHKESTTGRFLLGRS SEHGVVGDMRDTWPNAQVRKNVSLVHTFHDFKGDKQGALEFFKLILRALCLCWDRQTQDLHVDWILFRGRSLIPVQCEVVNDNINGRYPSSHYPIFAEFM LPRSVRLLEPPLTAEENPLAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	0	1
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	2.82	0.7900
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G109000 [exp]	5.47	0.7768
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	5.83	0.8010
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.019G128600 [exp]	7.74	0.7782
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	7.74	0.7880
AT5G17680			disease resistance protein (TI...		Potri.017G010800 [exp]	8.36	0.7711
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.014G021700 [exp]	9.16	0.7501
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	11.83	0.7399
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	14.49	0.7561
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	16.24	0.7710

Compare expression of checked genes

Potri.018G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.