Plant FIBer expression Database

Potri.018G106800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30920 872 / 0 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
AT2G24200 832 / 0 Cytosol aminopeptidase family protein (.1.2.3)
AT4G30910 819 / 0 Cytosol aminopeptidase family protein (.1)
AT5G13940 79 / 5e-15 aminopeptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G184500
[exp]
971 / 0 AT4G30920 835 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035823
[exp]
811 / 0 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10036266
[exp]
808 / 0 AT4G30920 773 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10022152
[exp]
686 / 0 AT4G30920 657 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00883 Peptidase_M17 Cytosol aminopeptidase family, catalytic domain
CL0223 MACRO PF02789 Peptidase_M17_N Cytosol aminopeptidase family, N-terminal domain
Representative CDS sequence
>Potri.018G106800.2 pacid=42801597 polypeptide=Potri.018G106800.2.p locus=Potri.018G106800 ID=Potri.018G106800.2.v4.1 annot-version=v4.1
ATGGCCGCCACAGTGGTATCCTTGGCCACTTCACTTACTGCTGCTGTTGTCCCTTCATCTTTCTCATCTTCCTCGTCCTTCGTTTTCACCAAGTTGTGGT
CGACACCTTGTCTTAGAATCACTTTTTCAGTCTCACCCTTTTCTTATTCCAGAGGAGGCGGCAAACTCATGGCTCACTCTTTAGCTCGTGCTACTCTTGG
TCTTACCCAGCCTGCTAACATCGATGCCCCTAAGATTGCTATCTCTGCAAAAGAGATTGATGTGGCAGAATGGAAAGGAGATATCCTTGCTGTTGGTGTT
ACAGAGAAAGATATGACCAAGGATGACAGCAAGAGGTTTGAGAACTCTCTTTTGAAAAAGCTAGATGCCAAGCTGGGTGGTCACTTAAGTGAAGCCTCTT
CCGAGGAGGATTTCACAGGAAAACCTGGCCAGTCATTGGTTCTTAGACTTCCAGGTCTTGGTTCCAAAAGAATCGGCTTGATTGGGCTTGGACAGTCTGC
TACAAACACATATGCTTTTCGCAATTTTGGTGAGGCCATTGCAGCTGCTGCAAAGACTGCTCAAGCCTGTAATGTTGGCATTGTCCTTGCCTCAACTGGA
AGCACCTCAAATGAATCAAAACTTAATACTGCTTCAGCGATAGCATCTGGGACTGTGCTGGGGACATATGAAGATAATAGGTACAAGTCAGATTCAAAGA
AACCTGTGCTTAAATCTGTGGATATTCTTGGTTTTGGAACTGGACCTGAGCTAGAGAAGAAGCTCAAACATGCTGAAGATGTTTCTTCTGCTGTAATTTT
TGGAAAAGAACTTGTCAATTCACCAGCCAATGTACTCACCCCTGCGGTACTGGCAGAAGAAGCTACAAAGATTGCTTCCATGTACAGCGATGTTCTTTCA
GCTACCATCTTGAATGCAGAGCAGTGCAAAGAGTTGAAAATGGGATCCTATCTGGGTGTTGCTGCAGCTTCTGCTAATCCTCCACATTTCATCCATTTGT
GTTATAAGCCTCCAAGTGGACCTACTAAAGCCAAGCTGGCATTAGTTGGAAAAGGATTGACTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGG
CTGTTTCATCGAGCTCATGAAATTTGACATGGGAGGTTCAGCAGCAGTTTTAGGTGCAGCAAAAGCCATCGGTCAAGTTAAACCTCCTGGAGTTGAGGTC
CATTTCATCGTTGCAGCTTGTGAGAATATGATTAGTGGAACTGGTATGAGGCCAGGAGATATAGTTACAGCCTCAAATGGAAAGACGATTGAGGTCAATA
ACACTGATGCTGAAGGCAGGCTTACACTTGCAGATGCTTTAGTTTATGCCTGTAACCAGGGTGCAGAAAAGATAATTGACTTGGCAACGCTAACAGGAGC
CTGCGTAGTTGCTCTTGGGCCCTCAATTGCAGGTGTTTTTACACCCAGTGATGAGTTAGCGAATGAGGTATTTGCAGCAGCAGAAGCCAGCGGAGAGAAA
CTTTGGAGGATGCCGATGGAGGAAAGTTACTGGGAGTCCATGAAGTCAGGAGTAGCTGATATGGTAAACACTGGTGGCCGTCAGGGTGGGGCTATCACTG
CAGCTCTGTTTTTGAAACAGTTTGTTGACGAGAAGGTTCAATGGATGCACATTGACATCGCTGGGCCTGTCTGGAACGAGAAGAAGCGCACTGCAACAGG
ATTTGGCATCCAAACCCTTGTGGAGTGGGTCCAGCAACACTCTTCTTAG
AA sequence
>Potri.018G106800.2 pacid=42801597 polypeptide=Potri.018G106800.2.p locus=Potri.018G106800 ID=Potri.018G106800.2.v4.1 annot-version=v4.1
MAATVVSLATSLTAAVVPSSFSSSSSFVFTKLWSTPCLRITFSVSPFSYSRGGGKLMAHSLARATLGLTQPANIDAPKIAISAKEIDVAEWKGDILAVGV
TEKDMTKDDSKRFENSLLKKLDAKLGGHLSEASSEEDFTGKPGQSLVLRLPGLGSKRIGLIGLGQSATNTYAFRNFGEAIAAAAKTAQACNVGIVLASTG
STSNESKLNTASAIASGTVLGTYEDNRYKSDSKKPVLKSVDILGFGTGPELEKKLKHAEDVSSAVIFGKELVNSPANVLTPAVLAEEATKIASMYSDVLS
ATILNAEQCKELKMGSYLGVAAASANPPHFIHLCYKPPSGPTKAKLALVGKGLTFDSGGYNIKTGPGCFIELMKFDMGGSAAVLGAAKAIGQVKPPGVEV
HFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGAEKIIDLATLTGACVVALGPSIAGVFTPSDELANEVFAAAEASGEK
LWRMPMEESYWESMKSGVADMVNTGGRQGGAITAALFLKQFVDEKVQWMHIDIAGPVWNEKKRTATGFGIQTLVEWVQQHSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Potri.018G106800
[exp]
0 1
AT2G44310 Calcium-binding EF-hand family... Potri.001G231100
[exp]
5.29 0.7557
AT3G11210 SGNH hydrolase-type esterase s... Potri.016G116000
[exp]
5.47 0.8414
AT5G53200 MYB TRY TRIPTYCHON, Homeodomain-like s... Potri.015G022000
[exp]
14.49 0.8127 MYB179
AT5G43940 PAR2, ATGSNOR1,... PARAQUAT RESISTANT 2, sensitiv... Potri.002G254900
[exp]
18.65 0.7991 FDH1
AT1G51060 HTA10 histone H2A 10 (.1) Potri.001G415700
[exp]
18.97 0.7707 HTA903
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.002G229325
[exp]
24.57 0.8018
AT4G23900 Nucleoside diphosphate kinase ... Potri.001G091001
[exp]
32.83 0.7921
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.002G228300
[exp]
46.78 0.6942
AT1G29720 Leucine-rich repeat transmembr... Potri.011G072941
[exp]
48.28 0.7475
AT5G55630 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE... Potri.008G004700
[exp]
55.13 0.7721

Potri.018G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.