Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EIF.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13950 290 / 4e-102 EIF5A, ATELF5A-1, EIF-5A eukaryotic elongation factor 5A-1 (.1) AT1G69410 281 / 1e-98 ATELF5A-3 eukaryotic elongation factor 5A-3 (.1) AT1G26630 262 / 2e-91 ATELF5A-2, FBR12 FUMONISIN B1-RESISTANT12, EUKARYOTIC ELONGATION FACTOR 5A-2, Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.1), Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185000 [exp] 325 / 4e-116 AT1G13950 291 / 6e-103 eukaryotic elongation factor 5A-1 (.1) Potri.008G092000 [exp] 319 / 8e-114 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Potri.010G162800 [exp] 312 / 6e-111 AT1G13950 286 / 7e-101 eukaryotic elongation factor 5A-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026637 [exp] 312 / 4e-111 AT1G13950 295 / 4e-104 eukaryotic elongation factor 5A-1 (.1) Lus10030422 [exp] 311 / 1e-110 AT1G13950 295 / 3e-104 eukaryotic elongation factor 5A-1 (.1) Lus10036801 [exp] 306 / 1e-108 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Lus10037129 [exp] 305 / 5e-108 AT1G13950 292 / 4e-103 eukaryotic elongation factor 5A-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01287 [poplar] [flax] eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Representative CDS sequence Show only first row Show all	>Potri.018G107300.1 pacid=42801922 polypeptide=Potri.018G107300.1.p locus=Potri.018G107300 ID=Potri.018G107300.1.v4.1 annot-version=v4.1 ATGTCGGACGAGGAGCACCACTTTGAATCAAAGGCTGATGCAGGAGCCTCCAAGACTTACCCTCAGCAAGCTGGTACTATCCGCAAGAATGGCTATATAG TCATCAAGAACCGTCCTTGCAAGGTTGTTGAGGTTTCCACCTCAAAGACAGGCAAGCATGGACATGCTAAGTGCCACTTTGTGGGGATTGATATATTTAA TGGGAAAAAGCTTGAAGATATCGTTCCTTCATCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAAGATGGC TTTGTGAGTCTTTTGACTGAAAATGGAAATACCAAGGATGATCTGAGGCTTCCCACTGATGATAGTCTGCTTACTCCGATTAAAGATGGGTTTGGTGAAG GAAAGGACCTTGTGGTGACTGTCATGTCTGCCATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGGTCCAAAAAATTGA
AA sequence Show only first row Show all	>Potri.018G107300.1 pacid=42801922 polypeptide=Potri.018G107300.1.p locus=Potri.018G107300 ID=Potri.018G107300.1.v4.1 annot-version=v4.1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG FVSLLTENGNTKDDLRLPTDDSLLTPIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.018G107300 [exp]	0	1	EIF.5
AT3G29270			RING/U-box superfamily protein...		Potri.017G090000 [exp]	1.00	0.7509
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165900 [exp]	14.79	0.6866
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.014G190300 [exp]	15.81	0.7450
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.002G183400 [exp]	17.77	0.6657	Pt-PPI1.3
AT5G58005			Cytochrome c oxidase, subunit ...		Potri.006G186500 [exp]	24.65	0.6275
AT3G16640		TCTP	translationally controlled tum...		Potri.008G221200 [exp]	27.12	0.6464
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	34.49	0.6242
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Potri.007G101100 [exp]	36.94	0.6289	KIWI.1
AT5G58570			unknown protein		Potri.001G279800 [exp]	38.20	0.6561
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	51.43	0.5876

Compare expression of checked genes

Potri.018G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.