Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24230 1153 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 721 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 344 / 1e-102 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 337 / 9e-100 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 333 / 1e-98 BRL1 BRI1 like (.1.2) AT3G13380 312 / 5e-91 BRL3 BRI1-like 3 (.1) AT5G45800 292 / 2e-87 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G02220 294 / 1e-85 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G01890 281 / 4e-81 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 279 / 3e-80 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185100 [exp] 1446 / 0 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G140500 [exp] 348 / 2e-104 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 342 / 2e-102 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.007G078100 [exp] 341 / 3e-101 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G086500 [exp] 333 / 8e-99 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G058500 [exp] 320 / 8e-98 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.011G169600 [exp] 331 / 1e-97 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 330 / 3e-97 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.015G141200 [exp] 323 / 2e-94 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036608 [exp] 1199 / 0 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 1164 / 0 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 349 / 2e-104 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 342 / 1e-101 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 340 / 4e-101 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10029235 [exp] 322 / 2e-98 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10006817 [exp] 325 / 1e-95 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 319 / 1e-93 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10007287 [exp] 304 / 6e-92 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10006675 [exp] 288 / 6e-84 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G107400.4 pacid=42800380 polypeptide=Potri.018G107400.4.p locus=Potri.018G107400 ID=Potri.018G107400.4.v4.1 annot-version=v4.1 ATGGGTTTTGGTTTTTTTGTCTCTGTATTGATTCTTTCTCTGTTCTTCAAGCCTTTGGCTTGTCAACAACCCAATACAGATGGTTTCTTTCTCTCTGAGT TTTTGAAGAACATGGGCTTAACTTCTTCTCCGCTGTACAACTTTTCTGCTTCTGTTTGTTCATGGCAAGGTGTGTTCTGTGATGCCAAAAAAGAACATGT TGTTAAGTTTCTGGCTTCTGGTTTAGGCCTCTCTGGCTCTATTCCTGATACCACTATTGGTAAACTAAGCAAGCTACAAACCTTGGATCTTAGCAACAAC GAAATCACATCTTTTCCTTCAGATTTGTGGAGTTTAGGCTTTCTGAATCTCCTCAATCTCTCTTCGAATAAGATTTCTGGGCCCCTTCCCAGCAACGTTG GTAATTTTGGCGTGCTTGAAACAATTGATCTATCAAGCAACAACTTTTCTGGTGAAATCCCTGCAGCAATAAGCTCTCTTGTTAGTTTGAGAGTGCTTAA ACTCGAACGAAATGGATTTGAAGGAAGCATTCCATCGGGAATTCTGAGTTGCCAGTCACTGCATTTTATTGATCTTTCAATGAATAAGCTGGATGGATCC TTACCAGATGGTTTTGGTGCTGCTTTTCCTAAGCTCAAAACCTTAAATCTTGCAGGAAATGGGATTCAAGGGCGGGACTCGGATTTCTCACTAATGAAGT CCATCACTATCCTTAACATCTCCGGGAATTCATTTCAGGGTTCAGTAATGGGTGTGTTTCAGGAGTTGTTGGAGGTGATGGACCTGAGCAAAAACCAGTT TGAAGGTCACATTTCTCAGGTACAATTCAATTCTACCTACAATTGGTCTCGCTTGGTTTATTTGGACTTGTCAGATAATCAGCTCAGTGGAGAAATTTTC CATGATTTCAGTCATGCCTCCAATCTCAAGTACCTTAATCTTGCATTCAATAGATTTACTGAAGAAGAGTTCCCGCGAATTGATATGCTTTCAGAATTAG AATATCTTAATTTGTCTAAAACTAGTCTCAGTGGTCACATTCCGAGTGAAATCACACAATTGAGTAATTTGCACACACTTGATCTTTCTCAGAATCATCT CAGTGGCAGAATCCCTCTGCTAACTATCAAAAACCTTCAAGTTCTTGATATGTCACAAAACAATTTGAGTGGAGAAATCCCAGTGTCCCTCTTGGAAAAT CTCCCTTGGATGGAGAGCTACAATTTCTCCTACAACAATTTAACCCTTTGTGCTTCAGAATTTTCCCCTGAAACCTTCCAATCACACTTCTCTGGATCAT TAGACAGCTGCCCAATTGCTGCAAACCCAGGCCTTTTTCATAGAAAAGTCTCCAACCACAAGGGATTAAAGCTTTCTCTGGGTTTAGCCCTTTCCGTGGT TTTCATGCTTGCTGGACTGCTATTTCTTGCCTTTGGTTGTAGAAGGAAATCCAAAATGTGGGAAGCAAAGCAAACCTCGTATAAGGAAGAGCAAAATATC TCAGGCCCGTTTTCCTTCCAGACTGATTCGACAACATGGGTTGCTGATGTCAAGCAGGCAAATTCAGTTCCAGTAGTGATTTTTGAGAAGCCACTGTCGA ATATCACATTTGCAGACCTCTTGTCTGCAACTTCAAATTTTGATAGAGGCACCCTTTTAGCTGAAGGGAAATTTGGGCCTGTATATAGGGGATTTCTTCC TGGAGGAATTCAGGTAGCTGTAAAAGTGTTGGTCCATGGATCCACATTGATAGACCAAGAAGCTGCCAGAGAACTTGAGTACCTTGGTCGAATTAAACAC CCCAATCTTGTACCATTGACTGGTTACTGCTTAGCCGGGGATCAAAGAATTGCAATATACGATTATATGGAGAACGGAAACTTGCAAAATTTGCTCCATG ACTTGCCGCTTGGGATCCGAACAACTGAAGAATGGAGCACAGAAACATGGGAGGAAGATCACAATAATGGAATTCAAAATGTTGGCACTGAAGGGTTATT AACAACCTGGAGATTCAGACACAAAATTGCCCTCGGAACTGCTCGTGCATTGGCATTTCTTCATCATGGCTGCTCGCCTCCAATTATTCATAGAGATGTC AAAGCTAGTAGTGTTTATCTAGATTATAACTTGGAGCCAAGATTATCTGATTTTGGCCTGGCCAAGATCTTTGGCAATGGTTTAGATGAGGAGATCGCTC GTGGCTCACCTGGTTATGTTCCACCTGAGTTTACTGATCCAGACAACGACAGCCCTACTCCAAAATCTGATGTATATTGCTTTGGTGTTGTTTTATTTGA GCTAATTACTGGGAAAAGGCCAAGTGGAGATGATTATGCTGAAGAGAAAAACTCCACTCTAGTTAGTTGGGTTAGAGGATTGGTGAGGAAGAGCGAAGGG TCCAGAGCAATTGATCCGAAAATTCGCAATACTGGACCAGAACGTGAAATGGAGGAGGCCCTCAAGATTGGATATCTGTGCACAGCTGATCTCAACTCCA AGCGACCAAGCATGCAACAGATAGTTGGACTTCTCAAAGATATTGAACCAACATGTTATCAATGA
AA sequence Show only first row Show all	>Potri.018G107400.4 pacid=42800380 polypeptide=Potri.018G107400.4.p locus=Potri.018G107400 ID=Potri.018G107400.4.v4.1 annot-version=v4.1 MGFGFFVSVLILSLFFKPLACQQPNTDGFFLSEFLKNMGLTSSPLYNFSASVCSWQGVFCDAKKEHVVKFLASGLGLSGSIPDTTIGKLSKLQTLDLSNN EITSFPSDLWSLGFLNLLNLSSNKISGPLPSNVGNFGVLETIDLSSNNFSGEIPAAISSLVSLRVLKLERNGFEGSIPSGILSCQSLHFIDLSMNKLDGS LPDGFGAAFPKLKTLNLAGNGIQGRDSDFSLMKSITILNISGNSFQGSVMGVFQELLEVMDLSKNQFEGHISQVQFNSTYNWSRLVYLDLSDNQLSGEIF HDFSHASNLKYLNLAFNRFTEEEFPRIDMLSELEYLNLSKTSLSGHIPSEITQLSNLHTLDLSQNHLSGRIPLLTIKNLQVLDMSQNNLSGEIPVSLLEN LPWMESYNFSYNNLTLCASEFSPETFQSHFSGSLDSCPIAANPGLFHRKVSNHKGLKLSLGLALSVVFMLAGLLFLAFGCRRKSKMWEAKQTSYKEEQNI SGPFSFQTDSTTWVADVKQANSVPVVIFEKPLSNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIQVAVKVLVHGSTLIDQEAARELEYLGRIKH PNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLHDLPLGIRTTEEWSTETWEEDHNNGIQNVGTEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDV KASSVYLDYNLEPRLSDFGLAKIFGNGLDEEIARGSPGYVPPEFTDPDNDSPTPKSDVYCFGVVLFELITGKRPSGDDYAEEKNSTLVSWVRGLVRKSEG SRAIDPKIRNTGPEREMEEALKIGYLCTADLNSKRPSMQQIVGLLKDIEPTCYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24230			Leucine-rich repeat protein ki...		Potri.018G107400 [exp]	0	1
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	3.87	0.9170
AT2G38370			Plant protein of unknown funct...		Potri.016G133300 [exp]	4.47	0.9121
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	8.83	0.9133
AT4G38050			Xanthine/uracil permease famil...		Potri.007G011400 [exp]	9.16	0.8895
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	10.53	0.9123
AT1G76250			unknown protein		Potri.012G136700 [exp]	15.00	0.8783
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.005G117800 [exp]	15.87	0.8561
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	18.33	0.8801
AT5G06610			Protein of unknown function (D...		Potri.006G196800 [exp]	19.77	0.8671
AT3G15890			Protein kinase superfamily pro...		Potri.001G203601 [exp]	19.77	0.8720

Compare expression of checked genes

Potri.018G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.