Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46220 531 / 0 Protein of unknown function (DUF616) (.1) AT4G38500 185 / 6e-53 Protein of unknown function (DUF616) (.1) AT1G28240 174 / 2e-48 Protein of unknown function (DUF616) (.1) AT1G53040 169 / 1e-46 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 154 / 6e-42 Protein of unknown function (DUF616) (.1) AT4G09630 151 / 2e-39 Protein of unknown function (DUF616) (.1) AT1G34550 149 / 8e-39 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 142 / 2e-37 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053000 [exp] 184 / 8e-52 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 182 / 1e-51 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 180 / 5e-51 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 179 / 2e-50 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 179 / 6e-50 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 177 / 8e-50 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 155 / 4e-42 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 158 / 7e-42 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 149 / 1e-39 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023312 [exp] 587 / 0 AT5G46220 552 / 0.0 Protein of unknown function (DUF616) (.1) Lus10038497 [exp] 577 / 0 AT5G46220 547 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 184 / 2e-52 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 183 / 4e-52 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 183 / 3e-51 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 170 / 1e-46 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 164 / 4e-45 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 163 / 6e-44 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 161 / 2e-43 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 156 / 2e-41 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [poplar] [flax] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Potri.018G107800.1 pacid=42800542 polypeptide=Potri.018G107800.1.p locus=Potri.018G107800 ID=Potri.018G107800.1.v4.1 annot-version=v4.1 ATGGTTATGGGGAAAGCAAAGTTGTCAAAACCTCTCATCTTCCAATCAAAACTTCTCTGTATCTCTTTGTTATACCTCATCACCACCCTCTTTCTAGCTC TCTACACCTCCATCTATCCAACCAAATGTCTCTTCAGATCCTCTCCTTTCGATCCAATTCAGACTCCTTTCTTCTCTTACCCTTCTTCTTATGGCGAACA CAAGTACGTGATTCCCACACATCGCTCTTCTTGCTCCTTCCCTATTTATTTCTCTGATTATTGGATGGTTTTGAAGGAGATCCTACAATTGTGTCAGAAT TCATCAGTTTCTTCCCATGCATTGCGGTATATGAAAGGAAACAGTAAGAATTTTGGTGGGAATTTCGGTACCCAGAAAAGGATTTCCTATTTCGATCTTT TAAATGACAGTGTAGAGGTTCCTTGTGGGTTCTTTCAGAGGTTCCCGGTCAGTGATTCTGATAGAATGGCGATGGAGAGTTGTCACGGAGTTGTTGTAGT CTCAGCAATCTTCAATGACCATGACAAAATAAGGCAGCCGAAAAGCCTTGGATCCAAAACTCTAGATAATGTGTGTTTCTTCATGTTTGTGGATGATATT ACCCTAAAAGGACTGGACCATCACGAAGTCATATCAAGAAACTCCCATGAATACAATGTAGGTGTATGGAGAATTATTAAGGTCTCAAGCAAGGATTTGT ACGATAATCCAGCTATGAATGGGGTGATCCCCAAATATTTAGTTCATAGACTCTTTCCAAACTCAAAATTTAGCATTTGGGTTGATGCAAAGCTGCAACT AATGGTAGATCCGTTGATATTGATCCATGCTTTGGTTGTGTCAGAGAAAGTGGACATGGCTATTTCAAAACATCCATTCTTTATTCATACCATGGAAGAG GCGCTGGCAACCGCTAGGTGGAAGAAATGGAAGGATGTTGATGGTCTGAGAAATCAAATGGAGACGTATTGTGAGAACGGATTGCAGCCATGGACACCGA AGAAACCCTACCCCTCAGATGTACCAGACAGTGCTCTTATCCTGAGGCAGCATGGACTGAATAGCAATCTATTCTCTTGCCTTGTATTCAACGAGCTGGA AGCTTTTAACCCGAGAGACCAACTGCCCTTTGCGTACGTTAGAGATCGTATGAAACCGAAGCTCAAGTTAAACATGTTCGAGGTGGAAGTGTTCGAGCAG GTGGCGTTGGAGTACAGGCACAACCTTAAAAAAGATGGGACTAGCGCCGGTGGAATTCCCAGTTCTAAAAGTGTCAGCAATGATTTGTATATTAATAGCA GTTGTTGTAGCAAGTGCCATAACTATCTTTTGGAAATGTGGGGTGAATCCCATAATTGA
AA sequence Show only first row Show all	>Potri.018G107800.1 pacid=42800542 polypeptide=Potri.018G107800.1.p locus=Potri.018G107800 ID=Potri.018G107800.1.v4.1 annot-version=v4.1 MVMGKAKLSKPLIFQSKLLCISLLYLITTLFLALYTSIYPTKCLFRSSPFDPIQTPFFSYPSSYGEHKYVIPTHRSSCSFPIYFSDYWMVLKEILQLCQN SSVSSHALRYMKGNSKNFGGNFGTQKRISYFDLLNDSVEVPCGFFQRFPVSDSDRMAMESCHGVVVVSAIFNDHDKIRQPKSLGSKTLDNVCFFMFVDDI TLKGLDHHEVISRNSHEYNVGVWRIIKVSSKDLYDNPAMNGVIPKYLVHRLFPNSKFSIWVDAKLQLMVDPLILIHALVVSEKVDMAISKHPFFIHTMEE ALATARWKKWKDVDGLRNQMETYCENGLQPWTPKKPYPSDVPDSALILRQHGLNSNLFSCLVFNELEAFNPRDQLPFAYVRDRMKPKLKLNMFEVEVFEQ VALEYRHNLKKDGTSAGGIPSSKSVSNDLYINSSCCSKCHNYLLEMWGESHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46220			Protein of unknown function (D...		Potri.018G107800 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	8.77	0.7571
AT4G36945			PLC-like phosphodiesterases su...		Potri.005G139400 [exp]	10.09	0.7773
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	11.22	0.8060
AT1G07120			unknown protein		Potri.009G073600 [exp]	13.11	0.8076
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.001G184300 [exp]	14.14	0.7237
AT2G35140			DCD (Development and Cell Deat...		Potri.015G122300 [exp]	23.43	0.7578
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	28.98	0.7753
AT3G47160			RING/U-box superfamily protein...		Potri.011G050700 [exp]	29.18	0.6966
AT1G72230			Cupredoxin superfamily protein...		Potri.002G101200 [exp]	32.86	0.7656
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	33.57	0.7414

Compare expression of checked genes

Potri.018G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.