Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51830 164 / 3e-43 Leucine-rich repeat protein kinase family protein (.1) AT1G52540 157 / 3e-43 Protein kinase superfamily protein (.1) AT3G21340 164 / 5e-43 Leucine-rich repeat protein kinase family protein (.1) AT2G04300 162 / 2e-42 Leucine-rich repeat protein kinase family protein (.1) AT2G28970 160 / 7e-42 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 160 / 7e-42 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 160 / 9e-42 Leucine-rich repeat protein kinase family protein (.1.2) AT2G29000 159 / 2e-41 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 159 / 3e-41 Leucine-rich repeat protein kinase family protein (.1) AT1G51800 157 / 7e-41 IOS1 IMPAIRED OOMYCETE SUSCEPTIBILITY 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 189 / 9e-53 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.015G134500 [exp] 163 / 4e-45 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.013G053001 [exp] 164 / 1e-43 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.006G173800 [exp] 159 / 2e-43 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 156 / 7e-43 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.012G087000 [exp] 160 / 4e-42 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.004G063600 [exp] 157 / 4e-42 AT1G07650 479 / 4e-160 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.014G119100 [exp] 160 / 5e-42 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 157 / 5e-42 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006544 [exp] 216 / 3e-61 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10003274 [exp] 212 / 4e-61 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10012664 [exp] 162 / 4e-45 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 164 / 3e-44 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024813 [exp] 162 / 1e-43 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 161 / 2e-43 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10031673 [exp] 157 / 1e-42 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10019988 [exp] 156 / 2e-42 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10031582 [exp] 159 / 5e-42 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10001323 [exp] 154 / 2e-41 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G107901.1 pacid=42800453 polypeptide=Potri.018G107901.1.p locus=Potri.018G107901 ID=Potri.018G107901.1.v4.1 annot-version=v4.1 ATGTTTCTATGCAATCCTCACACTAGCTATACAAGTGCTTGTTCCCTGGATTTCAACAAGTTCCCGTATGAAGCACACAGTGAGTGCTTAGGCGTAGCCA ACGTCAAAGATTCAACCATGCAGTCGTGCTGCCACTCGGCTTTACAATCTCTGTTCCAAGCAATGGCTATAAGAGCTAACAAGTCTCGGTCGATATTTCT TGAATTAAACGAGGCTCAAGATTGCACCAAAACATTCCAAAATCTTCACAACAGGACCAACCTCTCGACATGTGAACTCCAAGATTTTATCTCTTCTTCA AAGACACCAAACTTATGCTCAAAAGATGTTGATTCACTCATAAATCTTCTTGGGGTCGAGAGATTCAGTGCCCTTCAATCCAATTGCAATAACTTATCAA CTAGCAATTACAATGATGATGCTTGTTACAGTTGTGTCATGTCATATAGAAGTTCTTTGCAAGCCTTGAAACAAAGTGGTGATAGCCCGAATGGAGAGTA CTGTGGGGAAGCTCTTCTTCTTAGTCTTTTGAGCACTGCTACAGATTCTGCAAACTCGATCCCAAGAATTTTTTCTTGTTTATGGGGTGAAATAGAAGGG AATCTCCTGGAATCAAAGAAACTCCTTTCTGCGATAATAGTAGCAGCAATCTTTGTCCTCTTAGCCCCAATTCTCTACAAGTTAACAAGGAAGCAACTAC AGCATGCATGTGACAAAGACATTGGTGAAAATTTATCAGTTCTTAAGAAAAAACAGGAGGAGGAATCTGTAAGTTACTTGAACTGTTGTGATCTCTACGT TTTCTCACAAGATGAAGTAGCAAAAGCTACCAATTCATTTGGTAATTCAAATTTTATTGGAGAAGGCGTTCTAGGGAAAACCTATATTGGAATGATGCCT AGTGGGATGAGAGTGGCAATCAAGAGACTTAAAGAAGGGGTTGAAGTTTGTCATTTTCTTGATGAGATATGTGAAAAAGCAAAAATAAGGCATCCAAATT TGGTCGGCATTATTGGCTATTGCAATAAAGGAGATCAATCTTTGGTCTATGAATATTGCCTTAATGGTGATTTAGCAACATGGCTTCTAGGTGATCGCAT GACATCTATCTTGACATGGCAGCAAAGGATGAATATATCTATAGGCATCGCTAGGGGCTTGTGGTATCTCCATCACAATCCATTGAAGAAGATATGCCAT GGAGACATGAAGCTAACAAAAATATTACTGAATGAGAAACTAGAAGCCAAGATTTCAGACTTCAATCTGTCACGCTACAAATCCAAGGAGAAAACGGGAC AGGAGAAGATTGCGAATGATGTTTTCAATTTTGGGATTCTACTGCTTCAAATCATGACAGGAAGAAAGTCCACGTCTATTGCTGAGGCAAGGGATGCAGT TTTGAGAAAAGGAAGCTTGAGTGGCTTGGCAGATCCTCGGCTAAATGGAGCTTACGATTCAGCTGCATTTCAAAATGCAATGTCCATAGCTGTTCATTGT ACAAATCCAAGTGAACGCGAAAGACCTAACATGGAAGAAGTGCTGCAGAAGCTTGAGCAGATTCAGACACAAATCTTGGTGAGAACCAATTGTAAAGATG TGATTTATTAG
AA sequence Show only first row Show all	>Potri.018G107901.1 pacid=42800453 polypeptide=Potri.018G107901.1.p locus=Potri.018G107901 ID=Potri.018G107901.1.v4.1 annot-version=v4.1 MFLCNPHTSYTSACSLDFNKFPYEAHSECLGVANVKDSTMQSCCHSALQSLFQAMAIRANKSRSIFLELNEAQDCTKTFQNLHNRTNLSTCELQDFISSS KTPNLCSKDVDSLINLLGVERFSALQSNCNNLSTSNYNDDACYSCVMSYRSSLQALKQSGDSPNGEYCGEALLLSLLSTATDSANSIPRIFSCLWGEIEG NLLESKKLLSAIIVAAIFVLLAPILYKLTRKQLQHACDKDIGENLSVLKKKQEEESVSYLNCCDLYVFSQDEVAKATNSFGNSNFIGEGVLGKTYIGMMP SGMRVAIKRLKEGVEVCHFLDEICEKAKIRHPNLVGIIGYCNKGDQSLVYEYCLNGDLATWLLGDRMTSILTWQQRMNISIGIARGLWYLHHNPLKKICH GDMKLTKILLNEKLEAKISDFNLSRYKSKEKTGQEKIANDVFNFGILLLQIMTGRKSTSIAEARDAVLRKGSLSGLADPRLNGAYDSAAFQNAMSIAVHC TNPSERERPNMEEVLQKLEQIQTQILVRTNCKDVIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51830			Leucine-rich repeat protein ki...		Potri.018G107901 [exp]	0	1
AT5G42690			Protein of unknown function, D...		Potri.002G128400 [exp]	8.48	0.6808
					Potri.006G021800 [exp]	19.84	0.7331
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.010G240600 [exp]	22.31	0.7157	Pt-GER2.19
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.015G006850 [exp]	40.64	0.5651
					Potri.003G056450 [exp]	48.66	0.5897
					Potri.019G017302 [exp]	49.41	0.6839
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	51.43	0.6188
AT4G29035			Plant self-incompatibility pro...		Potri.016G066900 [exp]	52.41	0.5606
					Potri.014G104100 [exp]	75.21	0.6333
					Potri.012G096050 [exp]	80.05	0.6086

Compare expression of checked genes

Potri.018G107901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.