Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58160 605 / 0 actin binding (.1) AT2G25050 592 / 0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 535 / 2e-179 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07740 525 / 2e-162 actin binding (.1) AT1G31810 514 / 5e-162 AFH14 Formin Homology 14 (.1) AT5G07770 425 / 6e-134 Actin-binding FH2 protein (.1.2) AT5G07650 400 / 2e-123 Actin-binding FH2 protein (.1) AT5G07780 375 / 1e-118 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 382 / 2e-116 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 206 / 2e-59 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185501 [exp] 911 / 0 AT5G58160 598 / 0.0 actin binding (.1) Potri.006G185601 [exp] 822 / 0 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G019600 [exp] 619 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 610 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.012G067900 [exp] 555 / 1e-175 AT5G07740 727 / 0.0 actin binding (.1) Potri.003G103800 [exp] 548 / 1e-173 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.015G061001 [exp] 536 / 3e-168 AT5G07740 722 / 0.0 actin binding (.1) Potri.007G054900 [exp] 137 / 1e-32 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.017G009900 [exp] 123 / 4e-28 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035830 [exp] 682 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 675 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10007447 [exp] 585 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 575 / 0 AT5G58160 600 / 0.0 actin binding (.1) Lus10015724 [exp] 526 / 2e-166 AT5G07740 723 / 0.0 actin binding (.1) Lus10023804 [exp] 520 / 2e-163 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 517 / 1e-162 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10003482 [exp] 508 / 3e-158 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 298 / 2e-91 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 213 / 5e-63 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain CL0154 [poplar] [flax] C2 PF10409 [poplar] [flax] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Potri.018G108000.4 pacid=42800809 polypeptide=Potri.018G108000.4.p locus=Potri.018G108000 ID=Potri.018G108000.4.v4.1 annot-version=v4.1 ATGTCGTTGTTTCGCAAATTGTTTTATAGGAAACCTCCTGATGGCCTTCTTGAGATCTCCGAGCGTGTTTATGTGTTTGATTGCTGCTTTAACATTGATG CTTGGCAAGAAGATTATGAAGGTTACATTGGTCGAACAGTTGGTCAACTTAAAGAACATTTCCCTGATGCTTCATTCTTGGTGTTTAATTTCCGTGAGGG AGAGAAACAAACCAAGATTGCTGATGCTTTATTCAAGTATGATATGACCTTAATGGAGTACCCTTGGCAATACGAGGGTTCCCCATTGCTCACGATGGAG ATGATTCACCATTTTCTAAGATCAGGTGAAAGTTGGCTCTCCCTTGGACAGCAGAATATTCTGTTAATGCACTGTGAACATGGTGGTTGGCCGGTTCTCG CTTTCATGCTGGCTGGACTGTTGATTTATAGGAAACAGTTTAGTGGAGAGCAGAAGACCTTGGACATGATTCACAGGCAGGCTCCCCGAGAGCTTTTGCA GTTGTTCTCAGCATTGAATCCTGTACCTTCTCAACTGAGGTATCTACAATATGTATCAAGGAGGAATGTGGCCTCATATTGGCCTCCATTGGATAGAGCT CTCACATTGGATTGTGTCATTCTAAGATCTATTCCTAATTTTGATGGGGAGGGGGGCTGCCGTCCACTATTTCGGGTATACGGGCAGGACCCTTTTCTTG TTTCTGATCGAACTTCCAAACTTCTGTACTCAACTCAAAAGGAAGGAAAAATTCCTCGGGCTTATAAGCAGATAGAATGTGAACTTGTTAAAGTTGACAT TAATTGCCATATACAAGGTGATGTTGTGCTGGAGTGTATCAGTTTAAATGATGACATGGAACATGAAGAGATGATGTTTCGAGCTGTGTTTAACACAGCT TTTATTAGGTCAAATATCTTGATGCTTAACCGTGATGAAATTGACATGTTATGGGATGCAAAAGATCGATTTCCAAAGGACTTCAGGGCAGAGATTCTTT TCTCTGAAATGGATGCAGCCGCATCCGTTGTTGCAGAAGATTTCACTGGCTTTGAGGAGAAGGAAGGCCTTCCTGTGGAAGCATTTGCTAAGGTTAAAGA GATCTTTAGCTCTGTTGACTGGTCTGATCCCAACTCTGATGCTGCACTTCATTTGCTCCAACAAATTAGTGCATCGAATATTGCTCAGGAAGACTCAAAT GCAGATTTGCAGCACAGAGTAGAGATTAGCACTCAAAAGCAAGAAATGAGTCCTAGAAAGGAACTTGCCAGCCAATCTATGGTCACTCACACCACTGTAT CTACAGTCTCCTCAGAACAAGCTTTGACAGTTTCAGCTGGAATTGAACTCATGGAACCCAAAGGTGGTTCTATCTCACCATCAACACCTGCACAGCCTCC ACCATTGTGGCCTGCTGTGACATCTAGTGCTGTAAAAGTTTTTCCTCATCCACTACCAACTCTTGATCTTTCAGCTTCAGAATCAGTAGATCATTCATCA ATCAAAGAGAATGAAACCTATTTAGAGAGCAGAGGTAAGTCATTATCAGTTGGCCTTCAACCTACTACTCCAACAACACCACCGCATCCACCTTTTAAGG AGGATAATTCCACTTTCAAAACTGAATGCCCAACCCCACCTCCTCCTCCAACGCCACCTATGAAGGAGATTCGCACCTCTAGAGCCGGACCTTCTCCACC TCCTCCGAAGCCACCCGTGAAGGAGAATAACACCATAGGAGCTGGACCTCCTCCACCACCACCACCTCCTCCACCACCACCTTTAAAGGAGAATAACACC ATTGCAGCTGGACCTCCTCCACCACCACCACCTCCTCCAACGCCACCTTTAAAGGATAATAACACCATTGCAGCTGGACCTCCTCCAGCACCACCACCTC CTCCAATGCCACCTTTGAAGGAGAATAACAAAATTGGAGTTGGACCTCCTCCTCCACCACCACCACCTCCGCCTTTGAAGGAGAATCATGTTATTGGATC TGGACCTCGTCCACCTCCCCCTCCTCCCCCTCCTCTTCATTCAGGGCCAACAACCAGCCTAACTGTTTCATCTCCGATGCCACCAGCGCCGCCGCCTCCT CCTATTATGTCAACCAATTCCTCCCATGCCCCTTCTGCACCTCCTCCTCCTTCTGGTAAGGGCACTTTAAAGACAGGCAACAATAGAAATATTAAATCGC CTGGGTCTCCATCTCTTGCACCACCTACTCCTGCACCTCCCTTAGGTTCTCCTTCCATCTCCAAGGGACGTTTGTCGCGTACTATAAGTTCACGGAACAA TCAAACTAAAAAGCTGAAGCCATTGCATTGGTTGAAGTTAACAAGAGCTGTACAAGGAAGCTTGTGGGCTGAGGCGCAAAAGTCTGGTGAAGCCTCCAAG GCCCCAGAGATTGACATGTCAGAACTTGAGAATCTTTTTTCCGCGGCAGTTTCAAATACAGATCATGGCGGGAAATCAAGTGTGCGTGGCTCACGGGGAC CTAAAGTTGACAAAGTGCAACTGGTTGACCACAGACGGGCATACAATTGTGAAATCATGCTTTCAAAGGTGAAAGTGCCACTACATGAATTAATGAGTTT AGTACTTTCCCTTGAGGATTCAGCATTAGACGTTGATCAGGTTGACAACCTCATAAAGTTCTGTCCAACAAAAGAGGAGATGGAACTGCTTAAGGGATAC ACTGGAGAAAAGGAAAAGTTAGGGAAATGTGAACAGTTCTTCTTAGAGTTAATGAAGGTGCCAAGAGTAGAATCTAAACTCAGAGTTTTCTCATTCAAGA TGCAGTTTCATTCCCAGGTCTCTGACCTCAGAAAAAGCCTTAATGTTGTGAACTCTGCAGCAGAAGAGATAAAGAATTCTGCCAAATTGAAGAGAATCAT GCAGACTATTCTTTCGCTAGGAAATGCTTTGAATCAGGGAACTGCTAGGGGTTCGGCTATTGGATTTAGATTGGATAGCCTTCTTAAACTAACGGATACA CGGGCAAGGAACAACAAGATGACTCTCATGCATTATCTTTGCAAGGTACTTGCTGACAAGCTACCAGAACTTCTAGATTTTTCGAAAGACCTTGCCAGTT TAGAACCTGCATCAAAGATACAATTGAAATTTTTGGCGGAGGAAATGCAAGCCATAAGCAAAGGACTGGAAAAAGTTGTACAGGAACTGTCTGCCTCGGA AAGCGATGGTCCTATATCAGACACATTCTGTAAGACTTTAAAGGAGTTCCTTTGTTTTGCCGAAGCTGAAGTAAGGTCTTTGGCTTCTTTGTACTCTGGA GTGGGGAAAAATGTGGATGCATTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGTCCCTTCGAACAAGTTGTATCAACTCTGTTCGATTTTGTGAGAC TGTTCCACAAAGCCCACGTGGAGAACTGCAAGCAGCTAGAGATAGAAATGAAGAAATTAGCAGAAAGTGAGAAGTCAAAGATAGGTGCTCACAAGGAGTT ACATGCTCGAATAGAGAGAGGCAGTGTCAAGTGA
AA sequence Show only first row Show all	>Potri.018G108000.4 pacid=42800809 polypeptide=Potri.018G108000.4.p locus=Potri.018G108000 ID=Potri.018G108000.4.v4.1 annot-version=v4.1 MSLFRKLFYRKPPDGLLEISERVYVFDCCFNIDAWQEDYEGYIGRTVGQLKEHFPDASFLVFNFREGEKQTKIADALFKYDMTLMEYPWQYEGSPLLTME MIHHFLRSGESWLSLGQQNILLMHCEHGGWPVLAFMLAGLLIYRKQFSGEQKTLDMIHRQAPRELLQLFSALNPVPSQLRYLQYVSRRNVASYWPPLDRA LTLDCVILRSIPNFDGEGGCRPLFRVYGQDPFLVSDRTSKLLYSTQKEGKIPRAYKQIECELVKVDINCHIQGDVVLECISLNDDMEHEEMMFRAVFNTA FIRSNILMLNRDEIDMLWDAKDRFPKDFRAEILFSEMDAAASVVAEDFTGFEEKEGLPVEAFAKVKEIFSSVDWSDPNSDAALHLLQQISASNIAQEDSN ADLQHRVEISTQKQEMSPRKELASQSMVTHTTVSTVSSEQALTVSAGIELMEPKGGSISPSTPAQPPPLWPAVTSSAVKVFPHPLPTLDLSASESVDHSS IKENETYLESRGKSLSVGLQPTTPTTPPHPPFKEDNSTFKTECPTPPPPPTPPMKEIRTSRAGPSPPPPKPPVKENNTIGAGPPPPPPPPPPPPLKENNT IAAGPPPPPPPPPTPPLKDNNTIAAGPPPAPPPPPMPPLKENNKIGVGPPPPPPPPPPLKENHVIGSGPRPPPPPPPPLHSGPTTSLTVSSPMPPAPPPP PIMSTNSSHAPSAPPPPSGKGTLKTGNNRNIKSPGSPSLAPPTPAPPLGSPSISKGRLSRTISSRNNQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASK APEIDMSELENLFSAAVSNTDHGGKSSVRGSRGPKVDKVQLVDHRRAYNCEIMLSKVKVPLHELMSLVLSLEDSALDVDQVDNLIKFCPTKEEMELLKGY TGEKEKLGKCEQFFLELMKVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSAAEEIKNSAKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDT RARNNKMTLMHYLCKVLADKLPELLDFSKDLASLEPASKIQLKFLAEEMQAISKGLEKVVQELSASESDGPISDTFCKTLKEFLCFAEAEVRSLASLYSG VGKNVDALILYFGEDPARCPFEQVVSTLFDFVRLFHKAHVENCKQLEIEMKKLAESEKSKIGAHKELHARIERGSVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	0	1
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	1.73	0.8174
					Potri.003G193100 [exp]	3.16	0.7935
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.006G128700 [exp]	3.60	0.7763
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	4.24	0.7952
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	5.29	0.7762
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	6.32	0.8164	NPH4.1
AT5G66540			unknown protein		Potri.003G194550 [exp]	7.41	0.7892
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	9.21	0.8115	AP2.15,RAP2
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	10.19	0.7956
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	12.72	0.7725

Compare expression of checked genes

Potri.018G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.