Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58000 347 / 1e-111 Reticulon family protein (.1) AT2G20590 150 / 3e-39 Reticulon family protein (.1.2) AT4G28430 148 / 2e-38 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G185700 [exp] 1043 / 0 AT5G58000 339 / 7e-109 Reticulon family protein (.1) Potri.007G137700 [exp] 155 / 2e-40 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2) Potri.017G014300 [exp] 146 / 8e-38 AT4G28430 283 / 5e-91 Reticulon family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035829 [exp] 456 / 7e-153 AT5G58000 326 / 1e-105 Reticulon family protein (.1) Lus10036611 [exp] 404 / 3e-132 AT5G58000 325 / 4e-105 Reticulon family protein (.1) Lus10002173 [exp] 121 / 7e-30 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2) Lus10039890 [exp] 114 / 2e-27 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF02453 [poplar] [flax] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Potri.018G108200.1 pacid=42801276 polypeptide=Potri.018G108200.1.p locus=Potri.018G108200 ID=Potri.018G108200.1.v4.1 annot-version=v4.1 ATGGATGTGGGTAGGAGAAGAGCTGGGGTTAAAACTAGTGTAGTAGCAGGTTCTGTGTGGGAGAACAGAATGAAACTTGATGAAGTTAAAGGTGGAATTA AGGTATTTAATGGAGAAGAGAATGTTGAAGAGAGTAGAAGTAGTAATGGAGATGTTGGAAAAAAGATGGTAAAGAGAGGACAGACTGGTACAAGTGCTAG TGTGGCTATGAGTGGCAAGAGAAAGACTTGGAAATCTGAGAGCTTAGATGGTCCAATTCAGATTGCAAAGGGAAAAAATACTGAACAGCTCTGTAAAGAA TTGAGTGTTTCGGTTGATGGAATCAAGAAAAATCCAGTTCAGGCAAGAAGGGGAAGATCTGAAGGGAGTAATAAGGTGCTTAGCTTGTCAGTTGATGGTA TTGATAAAAGCTCAATTCAGGTCAAGAAAGGAAGTAAAGAGCTTGATGGGATTGTAAGAAGTCCAATTCAGGTCAAGAAAGGAAGATCTGAACCAAATAA GGAGGTTGGTGTTTCTGTTGATGGAAATGAGAAAAGCCCGAGGCAGATAAGGAAGCAAAGATCTGATATAAAAGAGGTTGTTGAATATGATGTAGAATTG AGGAAAGTAAAATCTGATTCTGTTAAGGTTGCAGAGCAGTCTGAAATAGGTAAAGATCCTGTACTTGACGGTGGGGTTGAAAGGAATTCAGTTCAGTTAA GGATGGCGAAGTCAGAAGCTGACAAGGTACTGGATGAATCTGTTAATGGAATTGAGAAGAGCCCACCTGAAATTGAGGAGACTGGATCTGAGGAAACTTG TAAAGAGTCTGGTGTGTGCCAGGAAAAGGTCATTTCTATCAGTGAAACCACTGAGTCAGTAGAGAAACCACCTCCCAAGCTTTTGGTAGATAATCCTCCT CCTCTTGATGATGACGATGATGTTGTTATTGATGGTGATGAAGATATTGAGGGAGATGAAGATGAGGAAGAAATCGAAGAAGAAATTGAGATTCAGATTG AAAAGAAAAGCTTAGATATTAAGGAGATTAACATAGCAGAAGAGAAGCCTAAGAAGGTGGAAAAAAATGTAGCAGAACAAAAGCCTAAGAAGGTGGAATC AAATGTAGCGGAACAAAAGCCCAAGAAGGTGGAAACAAATGTAGCAGAACAAAAGCCCAAGAAGGTGGAGATTTGTATACCAGAACAGAAGCCTAAGAAA GTAGTGAGTGAAGTGAAAAAAGTTCAGCAATTTAACAACAGAACAGCACCAGCTTCTTCGATTGTGAATAAACAACCTCCTCCTGTAATAAAGAGAGCAA CTCTTTATCAAAATCTTGCAAAGGCTGCTCCTAATCCATCAATTCCAGTTGCTAATGAATACCAGAATTTCAAAGAAACTCGTAGACATAGCAAGCTTCA AAATCTAGTGGATCTAGTAATGTGGAGAGACGTATCAAGATCTACATTAGCCTTTGGAATGGGTACATTTATCATAATCTCATCCTCCTATACTAAAGAC CTCAATGTCAGTTTCATTTCTGTGATGTCCTATCTGGGACTTGTTTATCTTGCTACCATTTTTCTGTATAGATCGCTTATTTGCAGGGGAGTCATAGATA TAGATGATGATGGAAGCTATGTGCTGGGTGAGGGTGAGGCAATTTGGTTGTTAAAGTTGGTTCTGCCATACTTGAATGAGTGCTTGTTGAAAATTAGAGC CCTTTTTTCTGGTGATCCTGCAACTACAATGAAGATGGCTGTGTTGCTCTTTGTTTTTGCCAGGTGTGGCAGCTCCATCACCATTTGGAAGATGGCAAGA TTGGGCTTTTTTGGAGTCTTCACTGTACCAAAAGTCTGCTCTTCCTACTCCACACAGTTAACTGCTTATGGTAAATTCTGGATTCGACGATTTCGTGATG CTTGGGAATCATGCTCGCACAAGAAAGCCGTGGCCTTGTGCATCTTCACCCTCGTATGGAACCTCTCTTCAATGGTGGCTCGCATCTGGGCAGTGTTCAT GATGTTCGTGGCCGTCCGATATTATCAACAGACGATGGAGAGAGATGATTGGGTGGTGGAGGAGGAGGTGGACACAGAAGCTGATGGAACGTGGCATGGA GACATTGCAGGACAAAGACAAGGGAGTGGTCCCACTTCCGTGGAAGTGAATAAAGTGAAAAAGGGATCCTAA
AA sequence Show only first row Show all	>Potri.018G108200.1 pacid=42801276 polypeptide=Potri.018G108200.1.p locus=Potri.018G108200 ID=Potri.018G108200.1.v4.1 annot-version=v4.1 MDVGRRRAGVKTSVVAGSVWENRMKLDEVKGGIKVFNGEENVEESRSSNGDVGKKMVKRGQTGTSASVAMSGKRKTWKSESLDGPIQIAKGKNTEQLCKE LSVSVDGIKKNPVQARRGRSEGSNKVLSLSVDGIDKSSIQVKKGSKELDGIVRSPIQVKKGRSEPNKEVGVSVDGNEKSPRQIRKQRSDIKEVVEYDVEL RKVKSDSVKVAEQSEIGKDPVLDGGVERNSVQLRMAKSEADKVLDESVNGIEKSPPEIEETGSEETCKESGVCQEKVISISETTESVEKPPPKLLVDNPP PLDDDDDVVIDGDEDIEGDEDEEEIEEEIEIQIEKKSLDIKEINIAEEKPKKVEKNVAEQKPKKVESNVAEQKPKKVETNVAEQKPKKVEICIPEQKPKK VVSEVKKVQQFNNRTAPASSIVNKQPPPVIKRATLYQNLAKAAPNPSIPVANEYQNFKETRRHSKLQNLVDLVMWRDVSRSTLAFGMGTFIIISSSYTKD LNVSFISVMSYLGLVYLATIFLYRSLICRGVIDIDDDGSYVLGEGEAIWLLKLVLPYLNECLLKIRALFSGDPATTMKMAVLLFVFARCGSSITIWKMAR LGFFGVFTVPKVCSSYSTQLTAYGKFWIRRFRDAWESCSHKKAVALCIFTLVWNLSSMVARIWAVFMMFVAVRYYQQTMERDDWVVEEEVDTEADGTWHG DIAGQRQGSGPTSVEVNKVKKGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	2.44	0.9234
AT1G76660			unknown protein		Potri.002G001100 [exp]	2.82	0.9227
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	4.47	0.9284
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	4.58	0.9189	ALPHA.13
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	5.29	0.9060
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	5.65	0.9154
AT2G30700			unknown protein		Potri.007G133733 [exp]	5.74	0.9089
AT3G54290			unknown protein		Potri.008G019700 [exp]	6.00	0.9126
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	7.07	0.9209
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	7.74	0.9086

Compare expression of checked genes

Potri.018G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.