Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58003 498 / 8e-175 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G33540 244 / 6e-71 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT2G04930 168 / 1e-48 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 167 / 4e-48 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 164 / 2e-46 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 161 / 8e-46 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 156 / 5e-44 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 152 / 2e-42 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G23470 134 / 1e-35 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 124 / 9e-33 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164300 [exp] 233 / 5e-67 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.001G065600 [exp] 232 / 1e-66 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.003G173700 [exp] 53 / 3e-07 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 49 / 5e-06 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.011G049400 [exp] 47 / 2e-05 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.001G353700 [exp] 47 / 3e-05 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.004G040000 [exp] 45 / 0.0002 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.001G054700 [exp] 44 / 0.0002 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036277 [exp] 552 / 0 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10036689 [exp] 545 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 536 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036271 [exp] 236 / 5e-68 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10021854 [exp] 207 / 6e-64 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10015787 [exp] 49 / 4e-06 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10018479 [exp] 44 / 0.0002 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10027766 [exp] 44 / 0.0002 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10011195 [exp] 44 / 0.0003 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.018G108300.1 pacid=42800658 polypeptide=Potri.018G108300.1.p locus=Potri.018G108300 ID=Potri.018G108300.1.v4.1 annot-version=v4.1 ATGAGTCTGGTAACGGATTCTCCAGTTCACTCTTCTAGTAGTGATGATTTCGCTGCTTTTCTTGACACGGAGCTTGATTCCAAATCCTCTGCCTCTTCGG CTAGTGATGACGAAGCTCCCAATGAACGCCATTCTGACTCTGCTGCCTCCTCATCACCAGATCAAGATAAAGAAGCTGAAGAAGATGATGACTCCGACTT TCAAAGCAAGAGGGTAAAAAGGTCTAAGGTGGAGACTGTGGAAATTGTGGAGGATGACGGGGGAACTACTTCTTTTGCGTCTCTAAAGCACAACTCAGAG GCGTCAATCAGCAAGGAAATATGCACACATCCAGGATCATTTGGAACTATGTGTATTGTCTGTGGGCAATTGCTGGATGGGGAATCTGGTGTGACATTTG GGTATATACACAAGGGATTAAGGCTTGGTAATGATGAAATTGTTCGATTGCGCAACACTGATATGAAGAATTTGTTACGTCATAAGAAACTCTACTTGAT TCTTGATCTAGATCATACACTGCTTAATTCTACCCAGCTTATGCATATGACCTTAGACGAGGAATATCTAAACGGTCAAACGGATTCACTGCAAGATGTT TCAAAAGGCAGTCTCTTTATGTTGAGCTCCATGCAAATGATGACTAAGTTGAGGCCTTTTGTGCGTACGTTTCTCAAAGAAGCAAGTCAGATGTTTGAGA TGTATATATACACTATGGGTGATCGGGCGTATGCGTTGGAAATGGCCAAACTACTTGACCCTGGAAGAGAATACTTTAATGCTAAAGTCATTTCACGTGA TGATGGAACCCAAAGACATCAAAAGGGTCTTGATGTGGTCTTGGGGCAAGAAAGTGCTGTTCTAATCCTTGACGATACAGAAAATGCTTGGATGAAGCAT AAAGACAACTTGATATTGATGGAAAGATATCACTTTTTTGCATCAAGCTGTCATCAATTTGGATTTAATTGCAAATCCCTTTCGGAGCAGAAGACTGACG AGAGCGAGTCTGAAGGTGCACTTGCATCCATTCTTAAGGTTCTACGGAAAATTCACCAGATCTTTTTTGAGGAATTGGAAGAAAATATGGACGGCAGAGA TGTGAGACAGGTGCTCAAAACGGTTCGCAAGGATGTCCTGAAGGGATGCAAAATTGTATTCAGCAGAGTTTTCCCTACCCAATCGCAGGCTGATAATCAC CACCTTTGGAGGATGGCTGAGCAGTTGGGAGCTACATGCTCAACAGAACTTGATCCCTCGGTAACTCATGTGGTCTCAAAAGATTCTGGGACTGAGAAGT CACATTGGGCCTTGAAGCACAATAAGTTCTTGGTCCAGCCAGGGTGGATCGAAGCTGCCAATTATTTTTGGCAGAGGCAGCCCGAAGAGAATTTCGCTGT CAACCAAATTAAGAATTGA
AA sequence Show only first row Show all	>Potri.018G108300.1 pacid=42800658 polypeptide=Potri.018G108300.1.p locus=Potri.018G108300 ID=Potri.018G108300.1.v4.1 annot-version=v4.1 MSLVTDSPVHSSSSDDFAAFLDTELDSKSSASSASDDEAPNERHSDSAASSSPDQDKEAEEDDDSDFQSKRVKRSKVETVEIVEDDGGTTSFASLKHNSE ASISKEICTHPGSFGTMCIVCGQLLDGESGVTFGYIHKGLRLGNDEIVRLRNTDMKNLLRHKKLYLILDLDHTLLNSTQLMHMTLDEEYLNGQTDSLQDV SKGSLFMLSSMQMMTKLRPFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLDPGREYFNAKVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAWMKH KDNLILMERYHFFASSCHQFGFNCKSLSEQKTDESESEGALASILKVLRKIHQIFFEELEENMDGRDVRQVLKTVRKDVLKGCKIVFSRVFPTQSQADNH HLWRMAEQLGATCSTELDPSVTHVVSKDSGTEKSHWALKHNKFLVQPGWIEAANYFWQRQPEENFAVNQIKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	0	1
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	2.00	0.8554
AT1G19010			unknown protein		Potri.001G350000 [exp]	2.44	0.8501
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	5.19	0.8556
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Potri.018G015300 [exp]	6.32	0.8542
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	6.92	0.8277
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192400 [exp]	9.16	0.8267
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.009G114900 [exp]	9.48	0.8298	CHB901,SWI3.4
AT2G03810			18S pre-ribosomal assembly pro...		Potri.010G138100 [exp]	9.48	0.7957
AT4G02715			unknown protein		Potri.002G050900 [exp]	13.41	0.8001
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	13.41	0.8209

Compare expression of checked genes

Potri.018G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.