Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30960 640 / 0 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 502 / 5e-177 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 478 / 1e-166 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 473 / 5e-165 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G58380 469 / 1e-163 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G30270 460 / 8e-160 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 459 / 2e-159 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 455 / 2e-158 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G29230 452 / 4e-156 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G07070 444 / 8e-154 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186200 [exp] 792 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 495 / 4e-174 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G127500 [exp] 487 / 5e-171 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 488 / 6e-171 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 481 / 1e-168 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 474 / 6e-166 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 473 / 1e-165 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G062800 [exp] 468 / 4e-163 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 459 / 1e-159 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021852 [exp] 720 / 0 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 714 / 0 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 483 / 3e-169 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 478 / 4e-167 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10042229 [exp] 476 / 2e-166 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 465 / 3e-162 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 465 / 3e-162 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 462 / 3e-161 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10024448 [exp] 462 / 7e-161 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 454 / 1e-157 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G108500.2 pacid=42801272 polypeptide=Potri.018G108500.2.p locus=Potri.018G108500 ID=Potri.018G108500.2.v4.1 annot-version=v4.1 ATGGCAGAAACAACAAGTGATGGTCACCCGACCTTGCTTCATGGGAAATATGAACTGGGTCGGTTACTAGGCCATGGCACCTTCGCTAAAGTCTACCACG CGCGTAACTTGCAGAGTGGAAAAAGTGTGGCCATGAAGGTGGTTGGTAAAGAGAAGGTGATAAAGGTGGGGATGATGGAGCAAATCAAGAGAGAAATTTC AGTTATGAAGATGGTGAAGCACCCCAATATTGTTGAGTTACATGAAGTCATGGCTAGCAAGTCCAAGATCTATTTCGCCATGGAACTTGTTCGAGGTGGC GAGTTGTTCTCCAAGATTGAGAAAGGTCGGTTAAGAGAAGATGTGGCTAGAGTTTATTTTCAGCAGTTAATATCTGCGATCGATTTTTGTCACAGTCGCG GTGTTTATCATCGTGATTTGAAGCCTGAGAACTTGCTGCTTGACGAAAATGGGAAGTTGAAGGTTACAGATTTTGGGCTGAGTGCTTTCACTGAGCATTT GAAGCAAGATGGGTTGTTGCATACAACTTGTGGGACACCAGCTTATGTTGCACCTGAAGTAATTGGGAAGCAAGGGTATGATGGTGCCAAAGCAGATCTC TGGTCTTGTGGTGTTATTCTCTATGTGCTTCTTGCTGGGTTCTTGCCGTTTCAAGATGATAATATTGTGGCTATGTATAGAAAGATTTATAGAGGTGACT TCAAATGCCCTCCATGGTTCTCCTCTGAAGCTCGACGGCTGATTACCAAGCTTCTTGATCCAAATCCAAGCACTCGAATCACGATATCCAAGGTCATGGA TTCAACCTGGTTCAAGAAATCAGTGCCAAAGACCGTAAAAAGCAAAGAAGAGATGGAATTTGAAGCTTTCAATGGAGATGAAGATGCCAATGGAGACAAA TCAAAGCAACTCGAAACGTTGAACGCGTTTCACATAATATCTTTATCCCAGGGATTTGATTTGTCACCACTCTTTGAGGAGAGGAAGAGGGAGGAAAAAG AGGAGCTGAGATTTGCCACAACAAGGCCAGCAAGCAGTGTCATTTCAAGACTCGAGGAGGTGGGCAAGGCAGGGAATTTCAGTGTCAAGAAGAGCGATTC CAAAGTGAGATTGCAAGGGCAGGAGAGGGGTAGGAAAGGGAAGTTGGCTATTGCAGCTGATATTTTTGCTGTCACACCATCGTTTTTGGTGGTGGAGGTG AAGAAAGATAACGGAGACACGTTGGAGTTTAACCAATTCTGCAGTAAAGCGCTGAGACCAGCCCTTAAGGACATTGTGTGGATATCTCCTGCTGAGAATT CAACTCTTGCTAGAATATGA
AA sequence Show only first row Show all	>Potri.018G108500.2 pacid=42801272 polypeptide=Potri.018G108500.2.p locus=Potri.018G108500 ID=Potri.018G108500.2.v4.1 annot-version=v4.1 MAETTSDGHPTLLHGKYELGRLLGHGTFAKVYHARNLQSGKSVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGG ELFSKIEKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDENGKLKVTDFGLSAFTEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADL WSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITISKVMDSTWFKKSVPKTVKSKEEMEFEAFNGDEDANGDK SKQLETLNAFHIISLSQGFDLSPLFEERKREEKEELRFATTRPASSVISRLEEVGKAGNFSVKKSDSKVRLQGQERGRKGKLAIAADIFAVTPSFLVVEV KKDNGDTLEFNQFCSKALRPALKDIVWISPAENSTLARI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	0	1
AT4G37900			Protein of unknown function (d...		Potri.015G042800 [exp]	1.73	0.7242
AT1G63840			RING/U-box superfamily protein...		Potri.003G130900 [exp]	3.16	0.7351
AT4G30630			unknown protein		Potri.006G183000 [exp]	5.65	0.7022
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	9.21	0.6978
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	11.83	0.6674
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	14.66	0.6170
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	16.88	0.6616
AT5G35180			Protein of unknown function (D...		Potri.018G113100 [exp]	20.97	0.6550
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	22.58	0.6793
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	23.81	0.6891

Compare expression of checked genes

Potri.018G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.