Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24260 194 / 7e-58 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 177 / 6e-52 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 173 / 1e-50 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G02590 122 / 5e-32 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 117 / 1e-29 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G09530 66 / 2e-11 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT5G67110 63 / 3e-11 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36930 64 / 4e-11 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 64 / 8e-11 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G00050 59 / 2e-09 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186600 [exp] 576 / 0 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.013G041000 [exp] 133 / 5e-35 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 131 / 2e-34 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 124 / 4e-32 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G135600 [exp] 125 / 2e-31 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G045400 [exp] 122 / 2e-31 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G001300 [exp] 67 / 2e-11 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 66 / 2e-11 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.014G025800 [exp] 64 / 3e-11 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021846 [exp] 247 / 6e-78 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 194 / 5e-58 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10014726 [exp] 128 / 8e-35 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 130 / 9e-34 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 127 / 5e-33 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 129 / 6e-33 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 122 / 2e-31 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 117 / 2e-29 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018724 [exp] 63 / 3e-11 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 65 / 7e-11 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G109500.1 pacid=42800716 polypeptide=Potri.018G109500.1.p locus=Potri.018G109500 ID=Potri.018G109500.1.v4.1 annot-version=v4.1 ATGCAGCCTTGTAGTAGAGAAATGCAAGGGATTAACTCGCTCTTAAACCCATCATCACAAATCCCTCTACAAGACCTTCAAAACCAACAGAACCCTTCGC AGATCCAAAACTCTCACTTTGATCCCAATTCATCCTCGAATGATGATTTTCTTGAACAAATGCTGTCTAATATTCCTCCTTGTTCATGGCCTGACCTCAA GTCTCCTTGGGACCTCACCATGCCCATTAATAACAACGACAGCAGCAACTCTATAGCCAAACCTAGAGACTTGTCGGATGAAACCGCACCATCTAATACC GACAATAGTAATCTTGGGTTTCATAATAACTTTGATGAGTCTGTAATTTTGGCTTCTAAGCTGAGACAACACCAGATCAGTGGTGGTGGTGGTGCTGCCG CCGCCGCTAAAATGATGCTACAACAGCAGCTTCTGATGGCTGCTGCTCGCGGCGTCCTCCCTCAAAATGACGTCATTGATGGCTCCTCCTTTAAGGGAGG AGACGGTTCAATGCAAGGATTGTTTAATGGTTTTGGTGCTGGATCTATGAACGGAACTGGTCAGGCGTCGAACCAGTCCATGCAACATTTTAACCATCCC CAGGGAGGGGCTATGCAGGCACAGAATTTTGGGGCTCAAGGGGCAGCCACCACGGCTGTGATGAACCAACCTCAAGCAAGTGGCTCCAATGGTGGTGCAC CAGCTCAACCTAGACAAAGGGTTAGGGCTAGAAGAGGTCAAGCAACGGACCCACATAGCATAGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAAAGAAT GAAAGCTCTGCAAGAGTTGGTGCCTAATGCCAACAAGACAGACAAGGCTTCAATGCTTGATGAGATCATCGACTATGTTAAATTCCTGCAGCTCCAAGTC AAGGTCTTGAGCATGAGCAGATTAGGCGGTGCAGCTGCCGTTGCCCCCCTTGTTGCTGACATGTCCTCTGAGGCTGGTGGTGACTGTATCCAGGCCAGTG CCGATGGTGGGTCCCTCTCCCGTACCTCTAACGGCAACCAAACGGCCAGAACTAACGACAGCAGCTTGACGGTGACAGAGCACCAGGTGGCTAAGCTGAT GGAAGAGGATATGGGCTCAGCCATGCAGTATTTACAAGGGAAAGGGCTTTGTTTGATGCCCATCTCACTCGCAACCGCTATCTCAACCGCCACTTGTCAC AACAGGAGCCCCGCGATCAACAACAACCACCACGCTTTGCTCCAATCCAACGGCGAAGGGCCAGCCTCACCCAGCATGTCTGTTTTGACCGTCCAGTCGG CTACAATGGGTAACGTTGGAGGTGATGGTGGCGCTGTTAAAGATGCTGCTTCCGTTTCCAAACCGTGA
AA sequence Show only first row Show all	>Potri.018G109500.1 pacid=42800716 polypeptide=Potri.018G109500.1.p locus=Potri.018G109500 ID=Potri.018G109500.1.v4.1 annot-version=v4.1 MQPCSREMQGINSLLNPSSQIPLQDLQNQQNPSQIQNSHFDPNSSSNDDFLEQMLSNIPPCSWPDLKSPWDLTMPINNNDSSNSIAKPRDLSDETAPSNT DNSNLGFHNNFDESVILASKLRQHQISGGGGAAAAAKMMLQQQLLMAAARGVLPQNDVIDGSSFKGGDGSMQGLFNGFGAGSMNGTGQASNQSMQHFNHP QGGAMQAQNFGAQGAATTAVMNQPQASGSNGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQV KVLSMSRLGGAAAVAPLVADMSSEAGGDCIQASADGGSLSRTSNGNQTARTNDSSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCH NRSPAINNNHHALLQSNGEGPASPSMSVLTVQSATMGNVGGDGGAVKDAASVSKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.018G109500 [exp]	0	1
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.015G138200 [exp]	6.00	0.7756
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	6.16	0.8241
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.007G067600 [exp]	7.14	0.7566
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	7.21	0.8126
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.001G352400 [exp]	9.48	0.8122
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.013G111900 [exp]	11.40	0.7653
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Potri.019G083600 [exp]	17.08	0.6918
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	17.74	0.7926
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	19.23	0.7733
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G013600 [exp]	20.34	0.7422

Compare expression of checked genes

Potri.018G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.