Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58020 315 / 1e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186900 [exp] 497 / 3e-177 AT5G58020 259 / 5e-84 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035833 [exp] 328 / 2e-110 AT5G58020 372 / 3e-128 unknown protein Lus10036615 [exp] 327 / 5e-110 AT5G58020 373 / 2e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04641 [poplar] [flax] Rtf2 Rtf2 RING-finger
Representative CDS sequence Show only first row Show all	>Potri.018G109800.3 pacid=42800529 polypeptide=Potri.018G109800.3.p locus=Potri.018G109800 ID=Potri.018G109800.3.v4.1 annot-version=v4.1 ATGCACACAAAAAGCCATCAAATTTTCATCCAATCTCAGAATCCCCAATTCAAAACCCAAACCCTAACTCTAGACCCAACTCAAACCCTAACCCTCTACA ATCTCAAGCTCTCTCTTATAACCGACAATCAAAATCCCTCTTCTTTCTATTTCACCCTCAACGGAAAACCTTTAAAAGACTCCACCTGTTTACCAAACCC ACAAATTACCCCTCTCTGCACCCTAATCTTACAAGTCCGGCTCTCCGGCGGCGGCGGAGATGGCGGTGCCACGGGGGCGGAGTCCAGGGACTGTTATCTC AACATGTATGCTGATAAAAAGCCTGATAAAGTGGATCCACATGAACTGCGCCTATCGAAATGGCTTAATTGCTCACTTTCGAATGAGCCCTTGAGGCAAC CTTGCGTAATTGATCGACTCGGTAATATGTTTAATAAGGAAGCTTTAGTTGAGGCTTTGATTGGTAAAAAATTGCCTAAGGAGTTTGGTTATATAAAGGG TTTGAAAGATATGATTGATATACAGTTAGAGGTGGTTCCGGGTGATGGGTCGGGTAATGCACGGTTTCAATGTCCGGTAACGGGGTTAGAGTTTAATGGG AAGTATAAGTTTTTTGCTTTAAAGAATTGTGGGCATGTTTTGAGTGCTAAGGCATTGAAGGAGGTAAAGTCATCGGAGTGTCTGGTTTGTTATAAAGAGT TTGAGGAGTGTGATAAGATTGTGATAAATGGGGGTGACGAGGAGGTGGCAGTTTTAAGGGAGAGAATGGAGGAGGAGAGATCGAAAATGAAGGAGAAGAA AATGAAGAAGGTGAAGAATGGGGAAGTGGGGGCTAATGGAGAGGAGTTTTCAGGTCAGGGTGCGGAGGTGTCGCAGTTGAGTGGTAAAAAGCATGGGATT GTTGATGTTAAGGGAGTGGATAAGGTTGTTGGGAAAGTGAAAGGAAATGGGAAGGTTGAGAATGTGAAAGGGGTTAGTCATGGTGGTTCGGTGAAGCGGT TTAAGGCTACTGATATGGTACCAACTAATGCCACTAAGGAGGTATATGCATCCATATTTACTTCCTCAAAGAAGCAAAGTTTCAAGGAGACGTATAGTTG TAGATCTCTTCCTCTTGGTAGGAACTAA
AA sequence Show only first row Show all	>Potri.018G109800.3 pacid=42800529 polypeptide=Potri.018G109800.3.p locus=Potri.018G109800 ID=Potri.018G109800.3.v4.1 annot-version=v4.1 MHTKSHQIFIQSQNPQFKTQTLTLDPTQTLTLYNLKLSLITDNQNPSSFYFTLNGKPLKDSTCLPNPQITPLCTLILQVRLSGGGGDGGATGAESRDCYL NMYADKKPDKVDPHELRLSKWLNCSLSNEPLRQPCVIDRLGNMFNKEALVEALIGKKLPKEFGYIKGLKDMIDIQLEVVPGDGSGNARFQCPVTGLEFNG KYKFFALKNCGHVLSAKALKEVKSSECLVCYKEFEECDKIVINGGDEEVAVLRERMEEERSKMKEKKMKKVKNGEVGANGEEFSGQGAEVSQLSGKKHGI VDVKGVDKVVGKVKGNGKVENVKGVSHGGSVKRFKATDMVPTNATKEVYASIFTSSKKQSFKETYSCRSLPLGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58020			unknown protein		Potri.018G109800 [exp]	0	1
AT5G58020			unknown protein		Potri.006G186900 [exp]	1.41	0.8639
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.001G293900 [exp]	1.73	0.8793
AT4G01000			Ubiquitin-like superfamily pro...		Potri.014G098100 [exp]	2.82	0.8461
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	3.46	0.8530
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	6.63	0.7863
AT5G13310			unknown protein		Potri.003G163100 [exp]	8.48	0.8255
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	10.72	0.8426
AT4G38710			glycine-rich protein (.1.2)		Potri.009G130200 [exp]	13.41	0.7685
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	13.41	0.8153
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	14.28	0.8126

Compare expression of checked genes

Potri.018G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.