Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 355 / 1e-102 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) AT3G66652 70 / 1e-11 fip1 motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187400 [exp] 1784 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.010G145150 [exp] 105 / 2e-22 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040030 [exp] 838 / 0 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10019610 [exp] 664 / 0 AT5G58040 412 / 6e-127 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10019609 [exp] 261 / 7e-77 AT5G58040 206 / 2e-58 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10016905 [exp] 65 / 5e-10 AT3G66652 90 / 6e-18 fip1 motif-containing protein (.1.2) Lus10040031 [exp] 54 / 9e-09 AT5G58040 50 / 8e-09 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [poplar] [flax] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Potri.018G110100.1 pacid=42801668 polypeptide=Potri.018G110100.1.p locus=Potri.018G110100 ID=Potri.018G110100.1.v4.1 annot-version=v4.1 ATGGAAGACGACGACGAGTTTGGAGATCTCTACACTGACGTCTTACGTCCATTCTCTTCGTCTCTATCCTCTGCTCCCCAACCTCTCTCCGCAACCTCTT CTCTCCACCGTCCGATCGATCTCAACGACGCAATCAAGGACGATGACGACGATATCCTCCACGTTGTTTCCCACCGTAACCCCTCTGCTCCCTCCAACCA AAATCCAATCGAAATCACCGCCTTTTCAGCTCCTCAAGTTAGGGTTTTGGGAGATGCAGAATCTCCGATTAAAGGTTCGATTGCCGAGGACAGAGATTTA AATTTTGATATCGAGGATGTTAATACTGGGATTCTTGAAGATTCGCGACCGATTATACCTGGATTGATGGAGGATGATTCTACAAAGATTGAAGCTTCTG CTGTGGTCAGTGGCGGCGGCGGCGGCGGAGGGGATTGGGAGGAGGACGAGGAGAGTGACAGCGAGGATGATTTGCAGATAGTGTTGAATGATAATAGTCA TCCTGGTGGGCCCATGGGGATTGACAGAGAGATTGGTGATGACGACGATGATGATGAGGATGGGGACCCGCTTGTGATTGTTACGGATGGGGATGGACCG AATCAAGCCATCGAGGAGAAGGATTGGGGTGGCGGCGAGGATGGGGTTGCTGCTGTAGGAGGTGGGGCGGAAGGGGAGAGGAAGGAAGGAGGAGAGGCGA CAGGGAAAGGGAATGCAGTGGTGGGACCGAAGATTGGGTATAACAATCATGGGTATCATCATCATCCGTTTCATTCTCAGTTTAAGTATGTGAGACCTGG GGCAGCTCTGATGCCTGCAGCTCCTATTGTTGGTCCTGGAGGAACTCCAGGTCAAGTTCGTCCTCCCATGAACATGAGTACTATAGCTGGTCGTGGTAGA GGTGACTGGCGACCAGTAGGAATAAAAGGTGGTCCTCAAAAGAACTTCCATCCAGGATTTGGAGGCCCTGCTTGGGGTGCAGGGCGGGGTTTTGGCAGTG GACTGGAATTCATGCTTCCTTCCCACAAGATGATATTTGATGTTGACATTGATGGCTTTGAAGAAAAGCCATGGAAATATTCGGGTGTGGACGTATCAGA CTATTTCAACTTTGGTTTGAATGAAGAGAGCTGGAAAGATTATTGCAAACAGCTGGAACAATATCGACTGGAGACTACAATGCAAAGCAAAATTCGTGTT TATGAAAGTGGGCGGGCAGAGCAGGAGTTTGATCCTGATTTGCCACCGGAATTAGCAGCAGCAACAGGTTTCCGTGATGCTCCAGCTGACAATTCAAATG CTGGAAAGTCAGACAACGCACAGAGTGATTGGACTAAAGGATCTGCTCGTTTCCGGGCCCAAATACCAACTGGCAGAGCAATACAAGTTGAAACTGGTCA TGGTGAACGCATCCCTTCCATTGAAGGCCGAGCTCCTCGACTTCGTGATTCTGATGCAATTATTGAGATTATCTGCCAGGACTCTCTAGATGATTCCTCC ACAGGAGATGGTGTCCAGGATGCAGCAAATGATGAACCTCAAAGAGATGACTTTAGAGGAAGCGATGTAGCCGAAGATGACATGGCGGAGACAGAAAATG AATATGCTGGTGATTTTCCACAGGCTTACAATGATCGAAAGGGTGGGAGAACACCTCACATGAATTCTGCCCGCAACATGCCTGAGGGAGATGGGGTTTC GCCCTTCCATCCCGAAGCAACAGCTCCATACCCCCATGCTGGTTCTAGGGGTCACCCTCCTTCGTACCCTGGTAGGGACTTTGGCACTCCTCGTGAGGAA AGGCAAATGCAGGGAAGATCCCGTGACAGATCACCTCATTTAACTCCTGCTCAAAGCTCATGTGACAAGAAATTTGTTGATAACGCGGAGGAAGAATCAA CTGAAAGTATGGTTGGTAAACACAGTCTGCGGGTATCATCTCCCATCACAGTTCAGGATGCAAGAGAGTTGAGTTCTGAGAAAAAAGATGATCCTGAGCC TTTGCAAGCTGAAGGAAGCTCTAGATTGGGAAGGGATGAAATGAGTGAGAATGAAGAAACCACTAATGATACTCCCAAGGATGGAAATATGCACCATTCT ACTAGGAAACAAAAAGTAAGTTCTCATGTAGAACAGCCTGCATTGCAACAGCTTGATGATGAGGAAGACTCAAAGGCTGCAAGAAGCAGTGAAAATAGCA AAGCAAGATCAGGCAGTAGCAAAGATTATCAAAAATGGAAGGATGGTGTTGAGGAGGAGGTTGTTCAAGGTGGACGTTCTACACGCTCAGGTAGCATCAG AAGGCACCTTGATGAAAATGAACAGAATTTTCGGAGAAAGGATCGTGATGTGAGACACGAGATGGAAAGAAGTCGTGTCATAATAAGAGGGAGGGAGGAT TCTTATCCTCGCAGAGACTTGGATCCTAGCTTGCCCCATCATTTGCATATGAAACATGAGGGCTATGATAGGAGAAAGGAGCGAGAAAATTCTGACATCT CTTGGCAACAAAGAGATGAAGATCCACATAGTAGCAAACATAGAACTGAAGACAGGAAGAGGGAACTTGGAGATGAAATGGGATCTAGGCACCGGAGTAA GATTCGGGAGACTGAGAGGAGCGACAAAGATGAACATCTTCATCCAAGAAAACAGTTAGAGAATGGCAGCTACAGGATTCATCATGACAAGGATGGTAGT TCACAACACAGGGAAAGAGATGACAGTTTGAAGAGTAGATTTGAAATGGTAGATGACTACCACAGCAAACGGAGGAAAGATGAGGAATATATGAAAAGAG AATATGCTGATAAGGAGGAGATCCTGCATGGCCACAGAGAAAATACCAGTCGCCGCAGGCGTGAAAGAGACGATCAGCAATGGATTAGAGACAATCTTGA TGACTATCACTCTGTTAGGCATAAAGATGAGGTCTGGTTCCAAAGAGAGAGGGGTGAGAGGCCGAGGGAAAGGGAGGATTTGTATAGGCTAAAACAATCC AATGAAGAAAACTTACCAAGACGGGAGAGAGAAGAAGGACGAGCTTCTGCGAGGAGTGGGCGTGGTGTGGATGACAAAGCATGGGCTGGCCATCCTAGGG GGAAAGATGAATATAAAGTTTCTGATAAAGACTACCAACTTAAAGATGCTGTTCGAAGCAGTGAACACCAGAAAAGAAGGGACCGAATGGAGGATGAAAG TCTTTCACATCATAGGGTGCGGGATGATGTTTATGCACGAGGAAATCAGTTTAGTAGTGATGAGAGAAGATCCAGGCAGGAAAGGTCAAGCACTCGCATC GATCGGACTCTGGATACTTCTGATAACCAGAGGGTGCATGAGAAGAAGCATAAAGAAAACACAAGGAAGAACAAAGAATCTGATGGTGGAGATCATGGCA CTTTGGGCCCTTCCAGAAGAAACCAAGAAGACCAGAGTGGTCACAGTGATGAAATGATTTTAAAACGCTCTCGTGCGCCAGGAAATGGAGACGCTGGGAT CTCGATCCAACGGAACTCTTCCAAAAGGCACAAGGAAGATGCTTCCTCAGATGATGAACAAGAAGATTTAAGGAGAGGACGCTCAAAATTGGAACGTTGG ACAAGCCATAAAGAGAGGGATTACAACATCAGCAAGTCATCAGCTTCCTTAAAGTTTAAAGAGATTCATAGGAATAGCAATAGCAATGGCAGATCCTTAG AAGGCAGTAAACTTCCCAACGAACTTCCCAAGAAAGTTGAGGTTGTTGAGAAGCGTACCAAAGTCGAGACTGTTGAGAAACATCCTGTGAGCGAAGAGAA AGATGTTGCTGAAGTGGTAAATAAGGATACTGATATGAAGCCATCAGAGGACCGGCACCTGGACACGGTTGAGAAGTTGAAGAAGCGGAGCGAGAGGTTC AAGCTTCCGATGCCAGGTGAGAAAGATGCCCTTGCAATAAAAAAGATGGAGAATGAGGCACTACCTTCTGTCAAACCCGAGACCCCTGCAGATTCAGAGA TTAAACCAGAGCGGCCTCCTCGAAAACGAAGGTGGATCAGCAATTGA
AA sequence Show only first row Show all	>Potri.018G110100.1 pacid=42801668 polypeptide=Potri.018G110100.1.p locus=Potri.018G110100 ID=Potri.018G110100.1.v4.1 annot-version=v4.1 MEDDDEFGDLYTDVLRPFSSSLSSAPQPLSATSSLHRPIDLNDAIKDDDDDILHVVSHRNPSAPSNQNPIEITAFSAPQVRVLGDAESPIKGSIAEDRDL NFDIEDVNTGILEDSRPIIPGLMEDDSTKIEASAVVSGGGGGGGDWEEDEESDSEDDLQIVLNDNSHPGGPMGIDREIGDDDDDDEDGDPLVIVTDGDGP NQAIEEKDWGGGEDGVAAVGGGAEGERKEGGEATGKGNAVVGPKIGYNNHGYHHHPFHSQFKYVRPGAALMPAAPIVGPGGTPGQVRPPMNMSTIAGRGR GDWRPVGIKGGPQKNFHPGFGGPAWGAGRGFGSGLEFMLPSHKMIFDVDIDGFEEKPWKYSGVDVSDYFNFGLNEESWKDYCKQLEQYRLETTMQSKIRV YESGRAEQEFDPDLPPELAAATGFRDAPADNSNAGKSDNAQSDWTKGSARFRAQIPTGRAIQVETGHGERIPSIEGRAPRLRDSDAIIEIICQDSLDDSS TGDGVQDAANDEPQRDDFRGSDVAEDDMAETENEYAGDFPQAYNDRKGGRTPHMNSARNMPEGDGVSPFHPEATAPYPHAGSRGHPPSYPGRDFGTPREE RQMQGRSRDRSPHLTPAQSSCDKKFVDNAEEESTESMVGKHSLRVSSPITVQDARELSSEKKDDPEPLQAEGSSRLGRDEMSENEETTNDTPKDGNMHHS TRKQKVSSHVEQPALQQLDDEEDSKAARSSENSKARSGSSKDYQKWKDGVEEEVVQGGRSTRSGSIRRHLDENEQNFRRKDRDVRHEMERSRVIIRGRED SYPRRDLDPSLPHHLHMKHEGYDRRKERENSDISWQQRDEDPHSSKHRTEDRKRELGDEMGSRHRSKIRETERSDKDEHLHPRKQLENGSYRIHHDKDGS SQHRERDDSLKSRFEMVDDYHSKRRKDEEYMKREYADKEEILHGHRENTSRRRRERDDQQWIRDNLDDYHSVRHKDEVWFQRERGERPREREDLYRLKQS NEENLPRREREEGRASARSGRGVDDKAWAGHPRGKDEYKVSDKDYQLKDAVRSSEHQKRRDRMEDESLSHHRVRDDVYARGNQFSSDERRSRQERSSTRI DRTLDTSDNQRVHEKKHKENTRKNKESDGGDHGTLGPSRRNQEDQSGHSDEMILKRSRAPGNGDAGISIQRNSSKRHKEDASSDDEQEDLRRGRSKLERW TSHKERDYNISKSSASLKFKEIHRNSNSNGRSLEGSKLPNELPKKVEVVEKRTKVETVEKHPVSEEKDVAEVVNKDTDMKPSEDRHLDTVEKLKKRSERF KLPMPGEKDALAIKKMENEALPSVKPETPADSEIKPERPPRKRRWISN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	1.41	0.9061
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	1.73	0.9179	HAF902
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	2.82	0.8831
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	4.89	0.8688
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.007G014100 [exp]	6.32	0.8593
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	6.32	0.8812
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	8.00	0.8366	Pt-TOP1.2
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	8.83	0.8081
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	9.79	0.8243
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	9.89	0.8672

Compare expression of checked genes

Potri.018G110100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.