Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATNAP10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63270 387 / 2e-138 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT1G67940 61 / 6e-11 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT3G62150 54 / 3e-08 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G41700 54 / 3e-08 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT4G01830 53 / 7e-08 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT5G14100 52 / 1e-07 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT1G27940 52 / 1e-07 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT2G47000 52 / 2e-07 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT5G64840 52 / 2e-07 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT1G02530 50 / 5e-07 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132000 [exp] 63 / 9e-12 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.014G113500 [exp] 56 / 5e-09 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 56 / 9e-09 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.006G049300 [exp] 56 / 1e-08 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.002G187500 [exp] 54 / 2e-08 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 54 / 3e-08 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113000 [exp] 54 / 4e-08 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G045900 [exp] 53 / 5e-08 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.002G187400 [exp] 52 / 1e-07 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006727 [exp] 382 / 3e-136 AT1G63270 404 / 3e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10022692 [exp] 380 / 1e-135 AT1G63270 403 / 8e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10040034 [exp] 79 / 1e-19 AT1G63270 79 / 3e-20 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10010067 [exp] 62 / 6e-11 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10035453 [exp] 57 / 2e-09 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10005798 [exp] 57 / 2e-09 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10006804 [exp] 57 / 4e-09 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10038050 [exp] 57 / 5e-09 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10036857 [exp] 56 / 1e-08 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10006209 [exp] 55 / 1e-08 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.018G110200.2 pacid=42800364 polypeptide=Potri.018G110200.2.p locus=Potri.018G110200 ID=Potri.018G110200.2.v4.1 annot-version=v4.1 ATGTTGCTTCGGAAAGCACCCCTCCCTCGGATCCTTCTCGACAATGTATCGTGCATGAGAAATGCCCAGCAAATCTTGCGGCATGTAAATGTCTCTGTTC ATGATGGTGGGGCGCTTGTACTGACAGGCAGCAACGGTTCGGGCAAGAGCACTTTTTTGCGAATGTTAGCTGGTTTTTCTAAGCCTTCTGCGGGTCAGAT ACTTTGGAATGGTCATGATGTGACTGAATCTGGAGTGTTCCATCAGTACAAGCTTCAGCTCAACTGGCTCTCCCTGAAAGATGCCATCAAGGAAAAGTTT ACTGTACTTGACAATGTTCAGTGGTTTGAACTTCTTGAGGGCAAGCAAGGGAATTCTCTGCCTGCTATTGAGTTGATGGGGCTTGGAAGATTAGCAAAGG ATAAGGCAAGAATGTTGTCCATGGGTCAGCGGAAAAGGCTGCAGCTTGCAAGGTTACTGGCGATTGACAGGCCAATTTGGTTGTTGGATGAGCCTTCTGT TGCATTAGATGATGACGGGGTGAGGTTGCTTGAGTACATCATCGCAGAGCATAGAAAGAAGGGAGGGATTGTGTTTGTTGCGACTCATCTACCAATTAAC ATTGAGGATGCCATGTACTTGAGGTTGCCACCAAGGTTCCCCAGAAGGATGACCTTGGTAGATATGCTCGATCGTGCAGAAATCTCATAA
AA sequence Show only first row Show all	>Potri.018G110200.2 pacid=42800364 polypeptide=Potri.018G110200.2.p locus=Potri.018G110200 ID=Potri.018G110200.2.v4.1 annot-version=v4.1 MLLRKAPLPRILLDNVSCMRNAQQILRHVNVSVHDGGALVLTGSNGSGKSTFLRMLAGFSKPSAGQILWNGHDVTESGVFHQYKLQLNWLSLKDAIKEKF TVLDNVQWFELLEGKQGNSLPAIELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVRLLEYIIAEHRKKGGIVFVATHLPIN IEDAMYLRLPPRFPRRMTLVDMLDRAEIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Potri.018G110200 [exp]	0	1	ATNAP10.1
AT3G62840			Small nuclear ribonucleoprotei...		Potri.002G204300 [exp]	4.47	0.7308
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.010G074100 [exp]	21.33	0.6724
AT5G20700			Protein of unknown function (D...		Potri.006G078300 [exp]	32.00	0.6922
					Potri.014G052766 [exp]	33.61	0.6559
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Potri.010G191800 [exp]	33.76	0.6833
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.013G041150 [exp]	38.47	0.6027
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058251 [exp]	44.49	0.6285
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Potri.018G069800 [exp]	57.54	0.6301
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	64.34	0.6052
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	78.06	0.6248

Compare expression of checked genes

Potri.018G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.