Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58050 871 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G58170 870 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G55480 608 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 598 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT4G26690 592 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66980 579 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 540 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G74210 106 / 2e-24 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 90 / 4e-19 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 1320 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.001G360700 [exp] 627 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 615 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 98 / 1e-21 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019605 [exp] 711 / 0 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10032576 [exp] 624 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040037 [exp] 621 / 0 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10031604 [exp] 598 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 593 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040036 [exp] 591 / 0 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10016584 [exp] 576 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 525 / 2e-177 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 499 / 1e-168 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019606 [exp] 475 / 9e-159 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.018G110600.1 pacid=42802244 polypeptide=Potri.018G110600.1.p locus=Potri.018G110600 ID=Potri.018G110600.1.v4.1 annot-version=v4.1 ATGATCAAGAATGTGCTTTTAGTTTTTTTGGTAATCCATGCGACGTTGGCGAATTCAGAATCTGCTTCAAAGAAATGGCTGACTCTAAATGGCCGGAGAC CTTCTGTGATAGCCCGAGGAGGGTTTTCGGGGCTCTTCCCTGAATCCAGTGACTTTGCAAATCAGATGGCGCTTGCGACAAGCCTGAGTGGTGTGGCTGT GCTCTGCAATTTACAACTAACAAAAGAAGGGGTTGGGATTTGCCAGGGAGATATCAGGCTTGACAACACAACAAATATAGCAATGGTATTTGAAAAGGGA TCAAGAACCTACAAGGTAAATGGGCAGGATATAACCGGGTGGTTCGCCATAGATTTTACAGCTGATCAACTCCTTGCCAATGTGTCCTTGCTGCAAAATA TTTTCTCCCGGCCAAGTGCATTCGACGCGATGCTGCCCATATCAACTGTTGATGATGTCAGAAGTTCCAATCCCCCTGCATTCTGGTTGAATGTTCAGTA TGATGCATTCTATACTGAAAACAAACTAAGTGTGGCAAATTACATTCAAAAGGCAACGAGACTTCAGGGTGTGAATTACATTTCTTCTCCTGAGATTGGT TTTTTAAAGAAAATCAATGGATTGGTGAACAAGGCTAAGACCAAGCTCGTCTTTGTGTTCCTAGACAAAAATGCAACTGAACCCACAACCAAGCAAACTT ATGGTTCAATTTTGGGAAATCTTGCCACAATCAAGGCATTCGCATCTGGGATTGTTGTCCCAAAAGATTACATATGGCCTGTTAATGCAGCTAACTATTT AGAAGCTCCCACTAGCCTTGTAAACGATGCTCATAAACTTGGTCTTGAAGTATATGCTTCTGGATTTGCAAATGACTTCACTACAAGTTATAATTATAGT TATGATCCATCAGCTGAGTACCTGCAATTCATTGATAATTCCCAGTTCTCTGTTGATGGGTTGATTACAGATTTTCCTCCCACAGCATCAGAGGCTGTTG CTTGTTTTGCTCAGTACACCGATATCAAACCTACAAAAGAACAAGCTTTGATCATAAGTCACAATGGAGCAAGTGGAGTTTATGCTGGGAGCACCGATCT TGCTTATCAGCAAGCTGTAGAGGATGGAGCTAACATAATAGATTGCTCAGTTCAAATGTCAAAGGATGGAGTGGCTTTCTGCTTGGATTCTGTGGATGTT ACAAGAGATACAACTGCAGCAGCTTCCTTCATGTCTCTATCCACCACTATCCCTGAAATTCAAGAGTCAGCTGGAATTTTTTCCTTTGACCTTTCATGGA GCGATATTCAAACACTGCAACCTCAATTGACAAGCCCTTTCGAGAATAAGGGTGGCTTGCCAAGAAACCCTGCAAACAAGAGCAAGGGTAAATTTCTTAC TCTTGCTGAATTTCTGGAATTGGCTAAAGTAAAGGCGGTTACTGGGATTTTAATCAACATTGAGAATGCCGCTTACCTAGCCTCACAGAAGGGTCTTGAT ATAGTATCTGCTGTTAACACTGCCTTTGGCAATGCCACACTTGGCAAGGAATCCACACAAAAAGTCCTAATCCAGTCAGACGACACATCAGTGTTGTCCA AGTTTAAGAACGTCCCAGCATACAGTAGAGTACTATATCTTAAAGATGAAATCAGTGATGCGCCCAGGACACCAGTGGAGGAGATCAAAAAATATGCTGA TGCAGTAACTCTGCCAAGATTCTCCATCGTGCCCACCGTTAATGGCTTCACTACAGGAACCACCAAAGTCGTAAACGAAATGCAAGCAGCGAATATCTCA GTATATGTCTCAGTCTTAAGGAATGAATTTATTACCCTTCCATTTGATTACTTTTCGGATCCTACAATAGAGATCGCAACTTACACTTCTGGAATAGGCG TTGATGGAATCATAACCGAGTATCCAGCAACTGCAAGCAGATATTTGAGAAATCCATGTTCTTCCAATTCCATGCCCGATAGCTCATACAGCATCATTCC AGCTGAAGCTGGTAGTCTACTGAAGACAGTTCCTGAAGAAACACAGCCACCAGCAAGTACACCAACACCAGCCTTGGATGTTGCAGATGTTGTGGACCCA CCACTCCCTGCCGTAACCAAACCTGCATCCCCCCCTCCTGCATCCCCCCCTCCTGCAACTTCACCTCATTCAAATGCCTTACAAAACATTGCTAACGTGG GCCTTTCTTTAGTAGCCATCATGGCATTTACCTTGCTATCTTTGATGTGTAATTAG
AA sequence Show only first row Show all	>Potri.018G110600.1 pacid=42802244 polypeptide=Potri.018G110600.1.p locus=Potri.018G110600 ID=Potri.018G110600.1.v4.1 annot-version=v4.1 MIKNVLLVFLVIHATLANSESASKKWLTLNGRRPSVIARGGFSGLFPESSDFANQMALATSLSGVAVLCNLQLTKEGVGICQGDIRLDNTTNIAMVFEKG SRTYKVNGQDITGWFAIDFTADQLLANVSLLQNIFSRPSAFDAMLPISTVDDVRSSNPPAFWLNVQYDAFYTENKLSVANYIQKATRLQGVNYISSPEIG FLKKINGLVNKAKTKLVFVFLDKNATEPTTKQTYGSILGNLATIKAFASGIVVPKDYIWPVNAANYLEAPTSLVNDAHKLGLEVYASGFANDFTTSYNYS YDPSAEYLQFIDNSQFSVDGLITDFPPTASEAVACFAQYTDIKPTKEQALIISHNGASGVYAGSTDLAYQQAVEDGANIIDCSVQMSKDGVAFCLDSVDV TRDTTAAASFMSLSTTIPEIQESAGIFSFDLSWSDIQTLQPQLTSPFENKGGLPRNPANKSKGKFLTLAEFLELAKVKAVTGILINIENAAYLASQKGLD IVSAVNTAFGNATLGKESTQKVLIQSDDTSVLSKFKNVPAYSRVLYLKDEISDAPRTPVEEIKKYADAVTLPRFSIVPTVNGFTTGTTKVVNEMQAANIS VYVSVLRNEFITLPFDYFSDPTIEIATYTSGIGVDGIITEYPATASRYLRNPCSSNSMPDSSYSIIPAEAGSLLKTVPEETQPPASTPTPALDVADVVDP PLPAVTKPASPPPASPPPATSPHSNALQNIANVGLSLVAIMAFTLLSLMCN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Potri.018G110600 [exp]	0	1
AT5G13760			Plasma-membrane choline transp...		Potri.009G056301 [exp]	1.00	0.8709
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	16.24	0.8398
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	17.34	0.8503
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	19.89	0.8264
					Potri.019G081450 [exp]	20.24	0.8400
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	22.44	0.8464
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	22.91	0.8284
					Potri.009G016766 [exp]	26.83	0.8276
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	27.11	0.7901
					Potri.016G080101 [exp]	28.46	0.7978

Compare expression of checked genes

Potri.018G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.