Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24280 727 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 540 / 0 Serine carboxypeptidase S28 family protein (.1) AT5G22860 369 / 5e-123 Serine carboxypeptidase S28 family protein (.1.2) AT4G36195 112 / 2e-26 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 99 / 4e-22 Serine carboxypeptidase S28 family protein (.1) AT3G28680 93 / 1e-21 Serine carboxypeptidase S28 family protein (.1) AT2G18080 94 / 3e-20 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207900 [exp] 559 / 0 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G008100 [exp] 536 / 0 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.001G212900 [exp] 420 / 5e-143 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 420 / 1e-142 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 415 / 5e-141 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 413 / 6e-140 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 411 / 2e-139 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 409 / 3e-139 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 402 / 6e-136 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011603 [exp] 528 / 0 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 513 / 7e-179 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10017002 [exp] 447 / 8e-155 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10005354 [exp] 403 / 3e-136 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 401 / 2e-135 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 388 / 4e-130 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 377 / 5e-126 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10039645 [exp] 255 / 1e-80 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 96 / 1e-20 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 54 / 1e-07 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.018G111000.1 pacid=42801785 polypeptide=Potri.018G111000.1.p locus=Potri.018G111000 ID=Potri.018G111000.1.v4.1 annot-version=v4.1 ATGGCTCCTTGTGCATCTCTTCTGCTTCCAGTCTTTGCCATTCTTGCAACACTACCAGTAATACAATCAGTGCCCACATTTTTTCCAAGACCAAGTTATG ATCAATCTTTAGCCAAACAACCAAAGGCCTCAAAACCAAAGATCCCATACAAGACTCACTACTTCCCGCAAGTCCTAGACCACTTCACATTTCAGCCTAA AAGCTCAAAAATTTTCTACCAAAAGTACCTTGTCAACAGCCATTACTGGCACAGAGGAGCTCCTATCTTCGTCTACACTGGAAATGAAGGTGACATTGAG TGGTTTGCTGCCAATACTGGCTTCTTGCTTGACATTGCTCCCAAGTTCAGAGCTCTTCTGGTTTTCATTGAACACAGATTTTATGGGGAGTCAATGCCAT TTGGAAACAAATCATACAAGTCTGCAGAGACATTGGGATACTTGAATTCACAACAAGCGTTGGCTGATTTTGCACTTCTGATAAGGAGTTTGAAGCATAA TCTTTCCTCTGAAGCATCTCCTGTGGTGGTTTTTGGTGGCTCTTATGGAGGAATGCTGGCAGCCTGGTTCAGACTGAAATACCCACACATAGCCATTGGT GCATTGGCATCTTCAGCCCCTATTTTGCAGTTTGATGACATCACTCCATGGTCAAGCTTTTATGATGCTGTCTCCCAGGATTTCAAGGAAGCAAGCTTGA ATTGCTATGAAGTGATAAAAGGGAGCTGGGCAGAGCTGGAGGCACTATCAGCTCAGAACGAAGGTTTGGCTGAACTGAGCAGAACTTTCAGAGCTTGCCA AGACCTTCATTCACTAGATTCAGTCTGGGAATGGTTATGGTCAGCATTTGTTTACACAGCCATGGTGAATTACCCAACTGAAGCTAATTTTATGATGCCA TTGCCTGCCTACCCTGTGCAAGCGATGTGCAAGATTATCGATGGATTTCCATCGGGGGCTTCCAAGATCACCAGGGTGTTCGCAGCTGCAAGCTTATATT ACAACTATTCTCGGGCAGAAAAATGCTTTAAGTTGGAACATGGACCTGATGCTCATGGTCTACATGGTTGGAATTGGCAGGCATGCACAGAGATGGTCAT GCCAATGACATGCTCTGAAGAGAGCATGTTTCCCACATCCAGCTTTAGTTACAAAGAGTTTGCAGAAGATTGTATGAAAACGTTTGGGGTTAAACCTCGA CCTCATTGGATCACTACTGAATTCGGTGGCAAAAGAATTGATCTTGTTCTGAAGAGATCAGGTGGCAACATCATATTTTCAAATGGAATGCAAGACCCCT GGAGCAGAGGAGGTGTGCTGAAAAATATATCTTCCAGCATCATTGCCCTTGTCACAGAAAAGGGAGCTCATCATGTCGATTTTCGATCCGCAACGAAAGA TGACCCAGAATGGCTTAAAGAGCTGAGGAGACAGGAAGTTGAGATCATTCAGGGATGGATAGACCAGTATTATCCAGATTTAAAGCGGACAAATAAAGAA TGA
AA sequence Show only first row Show all	>Potri.018G111000.1 pacid=42801785 polypeptide=Potri.018G111000.1.p locus=Potri.018G111000 ID=Potri.018G111000.1.v4.1 annot-version=v4.1 MAPCASLLLPVFAILATLPVIQSVPTFFPRPSYDQSLAKQPKASKPKIPYKTHYFPQVLDHFTFQPKSSKIFYQKYLVNSHYWHRGAPIFVYTGNEGDIE WFAANTGFLLDIAPKFRALLVFIEHRFYGESMPFGNKSYKSAETLGYLNSQQALADFALLIRSLKHNLSSEASPVVVFGGSYGGMLAAWFRLKYPHIAIG ALASSAPILQFDDITPWSSFYDAVSQDFKEASLNCYEVIKGSWAELEALSAQNEGLAELSRTFRACQDLHSLDSVWEWLWSAFVYTAMVNYPTEANFMMP LPAYPVQAMCKIIDGFPSGASKITRVFAAASLYYNYSRAEKCFKLEHGPDAHGLHGWNWQACTEMVMPMTCSEESMFPTSSFSYKEFAEDCMKTFGVKPR PHWITTEFGGKRIDLVLKRSGGNIIFSNGMQDPWSRGGVLKNISSSIIALVTEKGAHHVDFRSATKDDPEWLKELRRQEVEIIQGWIDQYYPDLKRTNKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.018G111000 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.006G149900 [exp]	7.21	0.8584
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	15.74	0.8416
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	16.58	0.8884
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	19.62	0.8834
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	21.02	0.8943
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	25.33	0.8884
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	25.92	0.8899	DHQD3
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	31.41	0.8882	LOX1.8
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	31.62	0.8750
AT3G50780			unknown protein		Potri.005G129700 [exp]	36.37	0.8598

Compare expression of checked genes

Potri.018G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.