Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 420 / 1e-149 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 324 / 3e-110 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 322 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 316 / 3e-107 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 313 / 2e-106 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 313 / 2e-106 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 304 / 5e-104 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 304 / 5e-102 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 285 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188100 [exp] 514 / 0 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G136400 [exp] 328 / 7e-112 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 325 / 1e-110 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 318 / 6e-108 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G102500 [exp] 318 / 1e-107 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 317 / 2e-107 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 316 / 5e-107 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 314 / 6e-107 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.003G096900 [exp] 314 / 2e-106 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040038 [exp] 442 / 5e-158 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 436 / 1e-155 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 324 / 2e-110 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 321 / 4e-109 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 310 / 5e-105 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10030951 [exp] 310 / 2e-104 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 305 / 2e-102 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 303 / 2e-102 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040096 [exp] 296 / 6e-99 AT1G32190 452 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 293 / 1e-97 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.018G111400.1 pacid=42801748 polypeptide=Potri.018G111400.1.p locus=Potri.018G111400 ID=Potri.018G111400.1.v4.1 annot-version=v4.1 ATGGGAAATGTAACGTCAAGTGTGGCAGCAAAATTTGCTTTTTTCCCGCCAGACCCTCCAACGTATGATGTGTTTAGAGAGAGTGATGGGAGGCTGGTGT TACCAGGTGTAACTGCAGACAAGAACATGGAGGTTCATTTGTTGGAAACTAAACCTGGGAACAAGATTGTGGCCACGTTTTGGAAACACCCTTTTGCAAG ATTTACAGTTTTGTACTCTCATGGAAATGCTGCTGACCTTGGACAAATGCATGAGCTTTTCATTGAGCTTAGAGCTCATTTGAGAGTCAATATTATGAGC TATGATTATTCAGGATATGGAGCATCTTCCGGCAAGCCATCTGAGTTCAACACATACTATGACATTGAGGCTGTGTACAATTGTTTGAAGAAGGATTATG GAATAAAGCAGGAAGACTTGATCTTGTATGGCCAATCTGTTGGAAGTGGTCCTACCCTGCACTTGGCTTCTCGTTTACAGAAGTTGAGAGGCGTCGTTCT TCACAGTGCAATTCTTTCAGGCATAAGGGTCTTGTGTCCTGTCAAGATGACATTTTGGTTTGACATTTACAAGAATATAGACAAAATACGTCTTGTCAGC TGCCCTGTTCTGGTTATCCATGGAACAAATGATGATATTGTTGATTTATCCCATGGAAAGCGCCTGTGGGAACTTGCCAAGGAAAAATATGATCCCTTAT GGGTCAAAGGTGGTGGGCATTGCAACCTGGAAACTTACCCTGAGTACATCAAGCACTTACGAAAGTTCATAAATGCGATGGAGAAAATCTCCATTGTTAA ACCGACAAAGCAACTCACACAGAACCCAAGTATTGAAGTCAAACACAACAAGTGCTTAAGATTTGGAATAAGGTAG
AA sequence Show only first row Show all	>Potri.018G111400.1 pacid=42801748 polypeptide=Potri.018G111400.1.p locus=Potri.018G111400 ID=Potri.018G111400.1.v4.1 annot-version=v4.1 MGNVTSSVAAKFAFFPPDPPTYDVFRESDGRLVLPGVTADKNMEVHLLETKPGNKIVATFWKHPFARFTVLYSHGNAADLGQMHELFIELRAHLRVNIMS YDYSGYGASSGKPSEFNTYYDIEAVYNCLKKDYGIKQEDLILYGQSVGSGPTLHLASRLQKLRGVVLHSAILSGIRVLCPVKMTFWFDIYKNIDKIRLVS CPVLVIHGTNDDIVDLSHGKRLWELAKEKYDPLWVKGGGHCNLETYPEYIKHLRKFINAMEKISIVKPTKQLTQNPSIEVKHNKCLRFGIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.018G111400 [exp]	0	1
					Potri.002G003050 [exp]	2.00	0.8723
AT1G64295			F-box associated ubiquitinatio...		Potri.010G224400 [exp]	4.24	0.8510
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	5.74	0.8496
AT4G12390		PME1	pectin methylesterase inhibito...		Potri.003G113700 [exp]	6.92	0.8342
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	7.34	0.8106
					Potri.009G148700 [exp]	8.71	0.8409
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093650 [exp]	10.58	0.8132
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154000 [exp]	14.86	0.8166	NAC101
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Potri.016G005900 [exp]	16.43	0.7568
					Potri.012G100450 [exp]	18.16	0.8127

Compare expression of checked genes

Potri.018G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.