Plant FIBer expression Database

Potri.018G111500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58200 61 / 1e-12 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G188200
[exp]
146 / 2e-44 AT5G58200 367 / 2e-127 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016863
[exp]
69 / 4e-15 AT5G58200 369 / 2e-128 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.018G111500.2 pacid=42801292 polypeptide=Potri.018G111500.2.p locus=Potri.018G111500 ID=Potri.018G111500.2.v4.1 annot-version=v4.1
ATGACTGTGGTTGATGCTAACAAGACTGTATACTTGGATGGGGCCATAGTTCCTCGAGCTCGAAGATTAGTTGTTGAACAAGGAACCGACAACACAAACT
CTATGAATGACGAAACTTCAGTGTTTTCCCCAGAGTCTGGAGGCACATTGCGAGCATTCACTTCATTGGAGGTTCTGGAAGGAAGAGTGGATAAAATTGC
AGAAACATGGGTTTCTGTTATTAGAGATGAGACCGCTTTGGAAGAGGAGCATGTATTGTTTCGACATGGCAATTAG
AA sequence
>Potri.018G111500.2 pacid=42801292 polypeptide=Potri.018G111500.2.p locus=Potri.018G111500 ID=Potri.018G111500.2.v4.1 annot-version=v4.1
MTVVDANKTVYLDGAIVPRARRLVVEQGTDNTNSMNDETSVFSPESGGTLRAFTSLEVLEGRVDKIAETWVSVIRDETALEEEHVLFRHGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58200 Calcineurin-like metallo-phosp... Potri.018G111500
[exp]
0 1
AT1G78720 SecY protein transport family ... Potri.011G114200
[exp]
3.00 1.0000
Potri.001G174350
[exp]
5.47 0.9684
AT5G26330 Cupredoxin superfamily protein... Potri.004G171100
[exp]
6.00 0.8294
Potri.012G136500
[exp]
7.21 0.9168
AT5G28780 PIF1 helicase (.1) Potri.007G048501
[exp]
11.53 0.8283
AT2G20800 NDB4 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400
[exp]
13.41 0.6722
AT1G19090 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-L... Potri.015G079200
[exp]
15.49 0.6948
AT2G32835 RALFL16 RALF-like 16 (.1) Potri.018G007800
[exp]
16.43 0.6419
Potri.002G113501
[exp]
16.52 0.6593
Potri.004G151450
[exp]
18.97 0.8097

Potri.018G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.