Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 377 / 1e-120 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23290 369 / 4e-118 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT1G11330 374 / 3e-117 S-locus lectin protein kinase family protein (.1.2) AT4G23130 366 / 3e-116 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23240 355 / 3e-116 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT3G16030 371 / 4e-116 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G23280 365 / 6e-116 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT3G45860 365 / 7e-116 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G11530 364 / 2e-115 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23200 363 / 2e-115 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 843 / 0 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 835 / 0 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 831 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111751 [exp] 491 / 7e-171 AT4G23290 255 / 2e-81 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Potri.004G024632 [exp] 380 / 1e-125 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G014802 [exp] 380 / 1e-123 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G036466 [exp] 375 / 1e-123 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.004G023550 [exp] 385 / 2e-123 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G027400 [exp] 387 / 3e-122 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019061 [exp] 718 / 0 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10024081 [exp] 687 / 0 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 675 / 0 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10036314 [exp] 411 / 1e-137 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 380 / 1e-125 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 387 / 8e-119 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020083 [exp] 363 / 2e-118 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 368 / 8e-117 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 377 / 1e-115 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031591 [exp] 373 / 2e-115 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G111600.3 pacid=42801924 polypeptide=Potri.018G111600.3.p locus=Potri.018G111600 ID=Potri.018G111600.3.v4.1 annot-version=v4.1 ATGGCATCGAGAATTACTATCATCATCCTCTTTCATGTATTTCTCTCTTTAAAATTGCATACTGCAAAAGCACAAGCATGGATCAAAGCTGGCTATTGGT TTTCTGGCAGTGACCTCCCAATTTCTGACATAAATTCTACCCTCTATACTCACCTTATTTGTGCTTTTGCTGGCCTTAATTCATCTTCGTATCACCTGTC TATCTCCTCCTCAGATGACCAATTCTTCTCTGCCTTCACAAACACCGTAAAACAGAAGAATCCATCGATCACTACCTTACTATCCATTGGAGGAGGAAGC GCAAACTATTCAACACTCTCTGCAATGGTAGGCAATTCTACTTACAGGAAGTCTTTCATAGATGACTCAATAAAAATAGCGAGGCATTATGGCTTTCAAG GGCTAGACTTCAGCTGGGTTTCGGCCAACACAAGCGATAACATGGACAGTATGGGTACCCTCTTCGAAGAGTGGCGTGCTGCTATTGCTTTGGAGAGAAG AAAGTCTAGCCTGTCAGAACTCATCCTGACAGCAGCGGTTCAGTACTCGCCAAGACTGGATTCCGGGAGTTTCCCTATAGACTCTATACGGAAGAATTTG AATTGGACTCATGTGCTGGCTTTTGACTACTACATGCCTACATGGGCTAAATTTACGGCTGCTTTTGCAGCTTTGTATGATCCTGATAGTGATGTTAACA CTGATTTTGGAATAGCAGCATGGATTAATGGAGGATTACCGGCTAGTAAGTTGGTTTTAGGTTTGCCTTTCTATGGTTATGCGTGGAAACTTGCAAACCT GAATGAAAGTGCCATTGGCGCACCAGCAACGGGACCAGCCGTTACAGAAGATGGAGACCTGAGCTATAAAGATATCAATAATTATTTCAAAACAAACGGA AGAGTTAATCCTATCTACAATTCCACTTATGTGGTAAATTACGGCATCGTAGGGCCAGCTTGGATTAGTTTTGATGGTGTCGATGTTGTTAGAACTAAGG TTTCTTATGCCAAGGAGAAGGCCCTCCTCGGATATGTTGTATGGGAAGTCTCTTATGATGACAACTGGGTACTCTCTCAAGCAGCTGGGGCGGTTGACTC AGCTGGGGGGGGTGACTCAGGTGGAGGGGTTGATCTCAAACACGAAGGACGACCAAAATCCCGTATATTGATTATCATCTTGACAACAACTGCTGCTGTT ATTATTCTACTGGGCTTGGCATTTTATTTCATAAGAAATAGAATCCTCAAATCAAAGAGTAAAGAAACAAAGTTGAAAGTAAATAATGCGGCGGCAGCAG GCGACTTCGACAGCAATAATCCTGATCTGATAGTATATAGTTTGGCAGATATTGAGAAAGCTACAGACCAGTTTGCATTTGAAAATAAGCTTGGGGAGGG CGGATTTGGCCCTGTTTACAAGGGTGTCTTACCAGGTGGACAAGAAATAGCAGTGAAAAAACTTTCGAAATCCTCTACTCAAGGATTTGATGAATTCAAG AATGAGGTTATGCTCACTGCAAAATTACAACATGTAAATCTCGTGAAAGTTTTGGGATTTTGCGTTGAGAGAGAAGAGAAGGTGCTGATCTATGAGTACA TGCCAAAAAAAAGCCTGGACTCTTACCTATTTGATCCGATTAGGCGATATTTGTTGGATTGGAAGAGAAGGGAAGAAATCATTGAAGGGATTACTCAAGG CCTTCTATACCTCCAAGAATATTCGAGACTGACAATTATCCACCGAGACTTGAAAGCCAGCAACATTTTACTGGATGGGGATATGAAGCCTAAGATATCT GATTTTGGTATGGCTAGAATTTTCACAAAAGATGAACAAGAAGCAAACACTAGCCGGCTTGTTGGGACATACGGTTATGTTCCTCCGGAATACGTCAGAA ACGGCGTGTATTCCATAAAATCTGATGTTTACAGTTTTGGAATAGTACTACTGCACATCATAAGCGGCAAGAAGAATGGCTCTTTGTATGGTTCTGATGA AACTTTAAGCCTCCTAGAATACGCTTACGAGCTGTGGAAAGATGGTAAAGGCATGGAGATCATGGATCCATCGCTGGATGATACATTGTCCTCTTGTAAA TTGATCAAATGCTTGCAAATTGCACTGCTATGTGTCCAAGAAAATCCTATTGATAGGCCGTCTATGTTGGAAGTTTCTTCAATGCTAAAAAACGAAACTG CCATTGTGACCATTCCCAAAAGGCCTGCTTTTTCTGTGAAGACAGATGAAGATGACAAAAACAGACCTGAGCAATTGCACTTAAAGATTTGTTCAGTTGA TGATGCAACAATTTCGCAAGTCGTCGGGCGATGA
AA sequence Show only first row Show all	>Potri.018G111600.3 pacid=42801924 polypeptide=Potri.018G111600.3.p locus=Potri.018G111600 ID=Potri.018G111600.3.v4.1 annot-version=v4.1 MASRITIIILFHVFLSLKLHTAKAQAWIKAGYWFSGSDLPISDINSTLYTHLICAFAGLNSSSYHLSISSSDDQFFSAFTNTVKQKNPSITTLLSIGGGS ANYSTLSAMVGNSTYRKSFIDDSIKIARHYGFQGLDFSWVSANTSDNMDSMGTLFEEWRAAIALERRKSSLSELILTAAVQYSPRLDSGSFPIDSIRKNL NWTHVLAFDYYMPTWAKFTAAFAALYDPDSDVNTDFGIAAWINGGLPASKLVLGLPFYGYAWKLANLNESAIGAPATGPAVTEDGDLSYKDINNYFKTNG RVNPIYNSTYVVNYGIVGPAWISFDGVDVVRTKVSYAKEKALLGYVVWEVSYDDNWVLSQAAGAVDSAGGGDSGGGVDLKHEGRPKSRILIIILTTTAAV IILLGLAFYFIRNRILKSKSKETKLKVNNAAAAGDFDSNNPDLIVYSLADIEKATDQFAFENKLGEGGFGPVYKGVLPGGQEIAVKKLSKSSTQGFDEFK NEVMLTAKLQHVNLVKVLGFCVEREEKVLIYEYMPKKSLDSYLFDPIRRYLLDWKRREEIIEGITQGLLYLQEYSRLTIIHRDLKASNILLDGDMKPKIS DFGMARIFTKDEQEANTSRLVGTYGYVPPEYVRNGVYSIKSDVYSFGIVLLHIISGKKNGSLYGSDETLSLLEYAYELWKDGKGMEIMDPSLDDTLSSCK LIKCLQIALLCVQENPIDRPSMLEVSSMLKNETAIVTIPKRPAFSVKTDEDDKNRPEQLHLKICSVDDATISQVVGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	1.41	0.9757
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	2.23	0.9622	Pt-MYB94.1
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	2.44	0.9642
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	4.24	0.9539
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	4.47	0.9637
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	5.91	0.9444
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	6.00	0.9423
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028701 [exp]	7.07	0.9212
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	8.66	0.9298
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	11.22	0.8944	Pt-IAA14.2

Compare expression of checked genes

Potri.018G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.