Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23200 365 / 3e-116 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G11530 363 / 3e-115 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23180 360 / 4e-114 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23240 344 / 5e-112 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G23290 352 / 1e-111 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G23150 352 / 5e-111 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23130 351 / 7e-111 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT3G45860 349 / 6e-110 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT1G11330 354 / 7e-110 S-locus lectin protein kinase family protein (.1.2) AT4G23310 350 / 2e-108 CRK23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111800 [exp] 1447 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111900 [exp] 905 / 0 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111600 [exp] 822 / 0 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125301 [exp] 372 / 8e-117 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G437950 [exp] 357 / 1e-116 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.011G027900 [exp] 364 / 2e-116 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 366 / 3e-116 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025200 [exp] 365 / 4e-116 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125351 [exp] 369 / 5e-116 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019061 [exp] 814 / 0 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10024081 [exp] 593 / 0 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 592 / 0 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10040021 [exp] 381 / 4e-124 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036314 [exp] 355 / 3e-116 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 352 / 6e-115 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10040020 [exp] 342 / 7e-113 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10014812 [exp] 360 / 7e-112 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 361 / 1e-111 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 350 / 6e-110 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.018G111700.1 pacid=42800776 polypeptide=Potri.018G111700.1.p locus=Potri.018G111700 ID=Potri.018G111700.1.v4.1 annot-version=v4.1 ATGGCTTGCAACAGTACTATGATCATCACCCTCCTTCTCTTTCTATCATCCTATGTTCACAGCTCAAACTCCCAGGAAACCTGGATTAGAGCAGGTTACT GGGATTCCGTCAGTGAACTGCCCGTTTCTAATATCAATTCTGCTCTTTTTACTCACCTTATATGTGCCTTTTCTCGTATAAATTCTTCTACTTATCATAT TCATATTAACTCTTCCAAAGAATCCTACTTCTCTACCTTCACAGGCACTGTCAGGGTTAAGAACCCTTCTGTTAAAACCCTTCTATCCATCTTGGCTAGG AGAGGGGGTCTTCCAACTTTTTCCTCAATGATAAATCAGTCTTCTTATAGGAAGTCTTTTATCGAGTCCTCGATATATACAGCGAGGCTTTATGGTTTTG ATGGCCTAGACCTTTCGGTTGGGCCAAGTATAAGCATCAACATGACCAATCTAGGAATCCTTTTCGATGAGTGGCGAGACGCTATAGCTTCTGATTCAAG AAAATCTGGCAAGTCACAGTTGCTCTTGGTAATGTCAGCTACTTACTCGCCTGCTCAGCACTCGGTTACTTATCCTATTGACATCATGAAAAGGACCTTA GATTGGATACATCTTGTTGCATATGACTATCATGTGCCTGCAGAATTTAATTTTACTGGTGCACATGCTGCTTTATATGGCACTTCAAATTGGGTTAACA CCGATGAATGGATAAAGGAATGGTTAAGAGGAGGATTATCTGCTAGCAAACTGGTTTTGGGTTTGCCTTACCATGGTTATGCATGGAGACTGGTGAACCC CAACGAAAAAGCGTTTGGGGCACCCTCCTCGGGTCCAGGTGTAACAAGTGATGGCTCCATGGGTTATAAGAATATTAAATCTTTCATTCAAGGTTATGGC TATGGAGCTGCAGCAGTGTACAATTCTACTTATGTTACGAAGCTTTTCGTTGTTGGGTCGACTTGGATCAATTTTGATGATGTGGAGACTATCAAGGCTA AGATTTCTTATGCAAAGGAAAACAATCTTAGTGGTTACAGCGTATTTCAGCTCTCCAATGACGATAATTGGATTCTTTCTCGAGCAGCTCAGGGAAAAGA TGAAGATGGGCTGAACAAGAGGAACGTATTGGTAACTATTCTGGTTACGATTGCTGTGGTCTTTCTCGTGTTGGGCACCATAATTTGTTGTTACTTTAGA AGGAAAAAACTCGGCTCAAAAGAAATTGCTGGGAGTGTCCAAAAATCACTATCTGCTACTAGAGTTATTAATAGCGATGCTCCAAATCTGCAAGCACTCA GTTTTGATACGATTGCTGCGGCTACTAATAACTTTTCGAGTGAAAACAAACTTGGAGCAGGTGGATTTGGCTCTGTCTACAAGGGTAAACTACCTAACGG AAAGGAAATAGCAGTGAAGAGACTATCAAAAACTTCGACCCAAGGTGAAGAGGAGTTCAAAAATGAGGTCACACTTACAGAAAAACTTCAACATGTGAAT ATTGTTACAGTTTTGGGATTTTGCACCGAGAGGGAAGAAAAGATGCTGATCTACGAGTACATGCCGAACAAGAGCTTGGATTTCTACATCTATGATCCAA TCAGAAGATACATGTTAGATTGGAGAAAACGCGTTCAAATCATTGAAGGTCTTACTCAAGGGCTTCTATATCTCCAAGAATACTCAAATTTTACCATTAT TCATCGAGACATAAAGAGTAGCAACATTCTATTGGATGAGGAAATGAACCCTAAGATATCAGACTTTGGTATGGCTAGGCTCTTCAGGAAAGATGAACTC GAAGCAAACACAAGCAGGATAGTTGGAACATATGGTTATGTCCCCCCTGAATATGTAAGAAAAGGCATATACTCCATGAAATATGATGTTTACAGCTTTG GAGTTCTACTCCTGCAAATCATAAGTGGTAAGAGGAGTACATGTTACTATGGTGCAGACGAAAACTGGAACCTTCTTGAATATGCATATGAATTATGGAA AGATGGTGAAGGCGTGGAGTTTTTCGATCCATCGCTAGACGATTCCTTTTCATCATGTAAACTCACAAGATGCCTGCAAGTTGCTCTATTATGCGTCCAA GAAAATCCTTTGGACAGGCCATCTATGTTAAAAATTTCTTCGATGCTAAAAAATGAAAATGCACCTATCGCCACTCCAAAAAGGCCTTCTTTTTCAACCA AAAGAGATGAAGAGGAGGACAGTGTTATCAGGAATAAAATTTATTCTGTGAATGATGCAACAATATCTGACTTGGAACCTCGCTGA
AA sequence Show only first row Show all	>Potri.018G111700.1 pacid=42800776 polypeptide=Potri.018G111700.1.p locus=Potri.018G111700 ID=Potri.018G111700.1.v4.1 annot-version=v4.1 MACNSTMIITLLLFLSSYVHSSNSQETWIRAGYWDSVSELPVSNINSALFTHLICAFSRINSSTYHIHINSSKESYFSTFTGTVRVKNPSVKTLLSILAR RGGLPTFSSMINQSSYRKSFIESSIYTARLYGFDGLDLSVGPSISINMTNLGILFDEWRDAIASDSRKSGKSQLLLVMSATYSPAQHSVTYPIDIMKRTL DWIHLVAYDYHVPAEFNFTGAHAALYGTSNWVNTDEWIKEWLRGGLSASKLVLGLPYHGYAWRLVNPNEKAFGAPSSGPGVTSDGSMGYKNIKSFIQGYG YGAAAVYNSTYVTKLFVVGSTWINFDDVETIKAKISYAKENNLSGYSVFQLSNDDNWILSRAAQGKDEDGLNKRNVLVTILVTIAVVFLVLGTIICCYFR RKKLGSKEIAGSVQKSLSATRVINSDAPNLQALSFDTIAAATNNFSSENKLGAGGFGSVYKGKLPNGKEIAVKRLSKTSTQGEEEFKNEVTLTEKLQHVN IVTVLGFCTEREEKMLIYEYMPNKSLDFYIYDPIRRYMLDWRKRVQIIEGLTQGLLYLQEYSNFTIIHRDIKSSNILLDEEMNPKISDFGMARLFRKDEL EANTSRIVGTYGYVPPEYVRKGIYSMKYDVYSFGVLLLQIISGKRSTCYYGADENWNLLEYAYELWKDGEGVEFFDPSLDDSFSSCKLTRCLQVALLCVQ ENPLDRPSMLKISSMLKNENAPIATPKRPSFSTKRDEEEDSVIRNKIYSVNDATISDLEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	0	1
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	1.00	0.9763
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	1.73	0.9673
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	2.00	0.9671	LJLCB2.1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	3.16	0.9673
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	3.46	0.9619
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	3.74	0.9581
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	5.47	0.9633
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	8.00	0.9466
AT1G66920			Protein kinase superfamily pro...		Potri.017G117065 [exp]	10.19	0.9496
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	10.58	0.9489

Compare expression of checked genes

Potri.018G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.