Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 369 / 4e-115 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G23180 362 / 1e-114 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23290 359 / 2e-114 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G11530 358 / 5e-113 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23230 349 / 8e-112 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23240 342 / 4e-111 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT3G45860 353 / 5e-111 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23150 352 / 5e-111 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G11900 355 / 6e-110 S-locus lectin protein kinase family protein (.1) AT4G21390 354 / 9e-110 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111700 [exp] 927 / 0 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 915 / 0 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 850 / 0 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G014802 [exp] 376 / 4e-122 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.004G023550 [exp] 377 / 3e-120 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G442200 [exp] 377 / 1e-118 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.011G028100 [exp] 370 / 7e-118 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G134900 [exp] 374 / 4e-117 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 373 / 4e-117 AT4G21380 630 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019061 [exp] 875 / 0 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10041639 [exp] 614 / 0 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10024081 [exp] 611 / 0 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10040021 [exp] 511 / 4e-174 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10040020 [exp] 377 / 7e-126 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10036314 [exp] 371 / 4e-122 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 352 / 1e-114 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 373 / 1e-113 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 367 / 1e-113 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 363 / 3e-113 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18 CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G111900.3 pacid=42801793 polypeptide=Potri.018G111900.3.p locus=Potri.018G111900 ID=Potri.018G111900.3.v4.1 annot-version=v4.1 ATGGCGATCAGAAATACCATTATCCTTCTCTTCTCGTTCGCCTTCCTATCTTCCCAAAATCGTTGTTCAGTTGCACAAAAATGGATTAAAGCTGGTTACT GGTACGGTGGTAGTGACTTCCCAATACCTGACATAAATTCTGCCTTGTTTACACACCTTCTTTGTGCATTTGCCAATGTCAACTCATCCACCTATGAGCT CTCCATCCCATCTGACTTTCAACAGAACTTCTCGATCTTCACCGGCATCGTCAAGCGCAAGAACCCTTCAATTGTAACGCTTCTGTCAATATGGAATGGG CAAGCTGAGACATACAAGTCCATTATAGGTGAGGCAGTTAACAGTTCTGTCTTGTCTTCAATGCTGACGCAATCTTCCTACAGGAAGTCTTTTATTGAAT CTTCGGTAAAAACAGCTAGGACTCTTGGGTTTCAAGGAATAGACTTGTTCTGGCTTTGGCCTAATAGCACAGATTTGTCAAATATAGGAACTCTGTTGGA TGAGTGGAGGGCTACTGTCGATTCCGAGCCAAGAAACTCAAGCGTGTCGAAGTTAATTCTAACAATGGGCGTTCGCTACTCACCAAGTCTTCAAAGTGTA AGTTATCCGATTAATTCAATGAAGAGGAATTTAGATTGGGCACATGTTGTAGCATATGACTATCACATGCCTTCAAGGGAGAACTTTACAGGCAACCATG CTGCTTTATATAATCCTTCAAGCAATATTTCTACCGATTTTGGCATTAGAGAATGGTTAAGTCGAGGATATCCAGCAAACAAACTACTTTTGGGTATGCC GTACCATGGATATGCCTGGAAACTAGTGGATCCCACTGACAATTCTCTTGGCGCACCAGCCTCAGGTCCTGGTGTTACCATTGATGGTTCAATAGGCTAT AGGTTCGTCAGATCATTCATTCAAAATTATGGTTATGGAGCTAGGTCAGTTTATAATTCTACTTATGTAGTGAATTATTTCGTTGCTGGATCAACTTGGA TCAATTTTGATGATGTGGAGACCGTTAGAGCTAAGATTTCTTATGCGAAGGAGAAGGGGCTACTTGGTTACAACGTGTTTCAAGTGATCAATGATGACAA TTGGGCTCTTTCTCTGGCAGCACAAGATGAGGTACACCAAGGAAAAAGGAGTTGGTTATGGCTAAAAATTGTGCTTCCAATTGCTTTGATCAGTATCTTA TCAGCCTCATTGATGTTTTACTACAGAAGGAGACTTTTTGAGCGAGAAGCTACAGGAACCAGAGTCTTAGGTGATAGAAGTTTCTCTGGTAGAGGAACTA GTTTATCGGCCGCTGCAGAAAATTTTGATGGTGATGCTCCTATCCTGCAAGTGTTCAGTTTTGAAAGCATTAAAGCAGCTACAAATAACTTTTCAAGAGA AAACCAGCTTGGAGAGGGTGGGTTTGGCCCTGTTTATAAGGGTAAATTACCAAGAGGCCTGGAAATAGCAGTGAAGAGGCTGTCAGCATCATCAACTCAA GGACTTGAAGAGTTCAAGAACGAGGTTTCGCTTACGGCTAGACTTCAACATGTAAATCTAGTTAGGCTTCTGGGATTTTGCTCCGAGAGGGGAGAGAAGA TGCTAATATACGAGTACATGCCAAATAAAAGCTTGGATCTCTACCTCTTTGATCCAATTAGAAGGTATAGCTTGGATTGGAGTAAGCGGGTTCGTATCAT TGAAGGGGTTACTCAAGGGCTTCTATACCTCCAAGAGTACTCAAATTTTACAATAATTCATCGAGATTTGAAATCTAGCAACATTTTACTAGACGATGAA ATGAATCCAAAGATATCAGATTTTGGCATGGCTAAACTTTTCAGGAAAGATGTGTATGAAGCAAACACAAGCAGAATTGTTGGAACTTACGGCTATATTC CTCCTGAATATGCGAGGAAAGGCATATATTCCATAAAGTATGATGTTTATAGCTTTGGAGTTGTCCTACTTCAAATGATAAGTGGAAAGACGAATACACG TTTTTACAGCGAAAACGAAGACTTGAACCTTTTAGAATATGCATATGACCTGTGGAAAAACGGGCGAGGAATGGAATTCATTGATCCATTTTTGGATGAC TCATCCTCACCTTGTAAACTACTGACATGCATGCAAGTTGCTCTGCTGTGTGTCCAAGAAAATCCAGATGCTAGACCAACAATGCTAGAAGCTTTCTCAA TGCTCAAAAATGATGATTCCCTGGCTATTGCTACTCCTGAAAGGCCAGGATTTTCAGAAAAAAAGAAAGGGGACATGGAAACTGCATCCTCATCCCAGCA AGTAATGTGTTCATTCAATGATTCGCAAGTTTCCCAATTGGAACCCCGTTGA
AA sequence Show only first row Show all	>Potri.018G111900.3 pacid=42801793 polypeptide=Potri.018G111900.3.p locus=Potri.018G111900 ID=Potri.018G111900.3.v4.1 annot-version=v4.1 MAIRNTIILLFSFAFLSSQNRCSVAQKWIKAGYWYGGSDFPIPDINSALFTHLLCAFANVNSSTYELSIPSDFQQNFSIFTGIVKRKNPSIVTLLSIWNG QAETYKSIIGEAVNSSVLSSMLTQSSYRKSFIESSVKTARTLGFQGIDLFWLWPNSTDLSNIGTLLDEWRATVDSEPRNSSVSKLILTMGVRYSPSLQSV SYPINSMKRNLDWAHVVAYDYHMPSRENFTGNHAALYNPSSNISTDFGIREWLSRGYPANKLLLGMPYHGYAWKLVDPTDNSLGAPASGPGVTIDGSIGY RFVRSFIQNYGYGARSVYNSTYVVNYFVAGSTWINFDDVETVRAKISYAKEKGLLGYNVFQVINDDNWALSLAAQDEVHQGKRSWLWLKIVLPIALISIL SASLMFYYRRRLFEREATGTRVLGDRSFSGRGTSLSAAAENFDGDAPILQVFSFESIKAATNNFSRENQLGEGGFGPVYKGKLPRGLEIAVKRLSASSTQ GLEEFKNEVSLTARLQHVNLVRLLGFCSERGEKMLIYEYMPNKSLDLYLFDPIRRYSLDWSKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKSSNILLDDE MNPKISDFGMAKLFRKDVYEANTSRIVGTYGYIPPEYARKGIYSIKYDVYSFGVVLLQMISGKTNTRFYSENEDLNLLEYAYDLWKNGRGMEFIDPFLDD SSSPCKLLTCMQVALLCVQENPDARPTMLEAFSMLKNDDSLAIATPERPGFSEKKKGDMETASSSQQVMCSFNDSQVSQLEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	0	1
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	1.41	0.9657
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	2.00	0.9554
					Potri.012G012100 [exp]	5.47	0.9399
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	6.00	0.9423
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	6.24	0.9481
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.015G139900 [exp]	7.34	0.9137
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G099900 [exp]	7.74	0.9258	DREB56
AT2G44930			Plant protein of unknown funct...		Potri.012G012202 [exp]	8.12	0.9286
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	8.36	0.9242
AT2G44930			Plant protein of unknown funct...		Potri.012G012000 [exp]	9.53	0.9302

Compare expression of checked genes

Potri.018G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.