Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 278 / 5e-91 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 274 / 4e-89 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 248 / 2e-79 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 247 / 5e-79 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 243 / 3e-77 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 234 / 5e-74 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 196 / 1e-59 Glycosyl hydrolase superfamily protein (.1) AT4G19770 191 / 2e-58 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19740 125 / 7e-34 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112000 [exp] 690 / 0 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G261800 [exp] 349 / 2e-117 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 345 / 2e-116 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 298 / 8e-99 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188300 [exp] 276 / 2e-90 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111600 [exp] 209 / 8e-61 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.018G111900 [exp] 192 / 1e-54 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 189 / 2e-53 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 185 / 3e-52 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018329 [exp] 323 / 3e-108 AT4G19810 268 / 1e-86 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10017124 [exp] 312 / 7e-104 AT4G19810 260 / 9e-84 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036311 [exp] 252 / 9e-81 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019060 [exp] 256 / 8e-80 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036306 [exp] 233 / 3e-73 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 215 / 2e-66 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 189 / 1e-53 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10040021 [exp] 185 / 1e-53 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036310 [exp] 171 / 8e-51 AT4G19810 277 / 3e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 164 / 2e-44 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.018G112100.2 pacid=42800828 polypeptide=Potri.018G112100.2.p locus=Potri.018G112100 ID=Potri.018G112100.2.v4.1 annot-version=v4.1 ATGGCAAGCCACAAATTGGTTCTTCTCCTTCCAGTCATTGTACTCTTTACCATCACCACCGGATATGTCATGGCTTCACCTCCGGCTGTCAAAGCTGCGT ATTGGCCTTCTTGGACTCAAACTTTCCCACCTTCAGCCATCGACACCACTTTGTTCACACACGTCTTCTATGCCTTTCTCTTGCCGAGTAATGTCACTTT CAAGCTCGAAGTATCCGAGTCAACTGCTTCCCTGCTCAAGAATTTCACTGGCACCCTTCATCAGAAAAACCCACCAGTGAAGACACTAGTCTCAATTGGG GGAGGTAGTAGTGATCCAAAACTCTTTGCTAGAATGGCGTCAAATAAAGGGTCGCGTAGCATTTTCATAGATTCAGCAATGGAAGTGGCGAGAAGACATG GATTTGATGGGCTGGATCTTGACTGGGAATTTCCTAAGGACCCAAAAGAGATGGTTGACTTGGGCCAGTTGTTTGAAGAATGGAGAGTTGCTATCAGAAA GGAAGCCAAGTCCACCCACCGGTCTCCTCTGTTGCTCACGGCTGCCGTCTACTTTGCCGTCGACTTTCAATGGGACGAGACCTACCGGAAGTTTCCAGTG GCATCCATCGCCAAAAGCTTGGATTGGGTCAATGCAATGTGTTATGAATACCGTGGTTCATGGGACACTTCGGCTACAGGAGCTCACGCGGCATTATATG ATCCTCATGGCAACATAAGCACGAGCTATGGGCTTACGTCGTGGGTTCGTGCTGGTGTGCCTGGAAACATGGTGGTCATGGGCCTGCCCCTGTACGGGAA GACTTGGCTGCTTAAAGACCCGAAGGTAAATGGAATCGGAGCACCGGCCACGGCGGCCGGTCCTGGAGATGATGGCGTCCTGATATTTTCCCAGGTGGAG AAATTCAATAAAGAGAATGGTGCCACCGTGGTGTATGATGCCAAAACTGTATCCACGTATTCTTATGCCGGGACTACTTGGATTGGATATGATGATAGCC GATCCACAACTGTGAAGCTAGAGTTTGCTCAGGCACTTGGCCTTCGTGGTTACTTCTTATGGGCCCTCAGTTATGATAGCGAGTGGGAAATCTCAAAACA AGCTTCAAGGGCATGGGTCATAAAAAGGTTTGGAGCTTTCTAA
AA sequence Show only first row Show all	>Potri.018G112100.2 pacid=42800828 polypeptide=Potri.018G112100.2.p locus=Potri.018G112100 ID=Potri.018G112100.2.v4.1 annot-version=v4.1 MASHKLVLLLPVIVLFTITTGYVMASPPAVKAAYWPSWTQTFPPSAIDTTLFTHVFYAFLLPSNVTFKLEVSESTASLLKNFTGTLHQKNPPVKTLVSIG GGSSDPKLFARMASNKGSRSIFIDSAMEVARRHGFDGLDLDWEFPKDPKEMVDLGQLFEEWRVAIRKEAKSTHRSPLLLTAAVYFAVDFQWDETYRKFPV ASIAKSLDWVNAMCYEYRGSWDTSATGAHAALYDPHGNISTSYGLTSWVRAGVPGNMVVMGLPLYGKTWLLKDPKVNGIGAPATAAGPGDDGVLIFSQVE KFNKENGATVVYDAKTVSTYSYAGTTWIGYDDSRSTTVKLEFAQALGLRGYFLWALSYDSEWEISKQASRAWVIKRFGAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112100 [exp]	0	1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	1.00	0.9556
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	6.00	0.8245	Pt-FRD3.1
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.010G112000 [exp]	6.78	0.8454
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	11.09	0.8350
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.001G169600 [exp]	21.16	0.7744
					Potri.001G141701 [exp]	25.27	0.8207
AT2G26470			unknown protein		Potri.002G250400 [exp]	26.68	0.8212
AT1G52540			Protein kinase superfamily pro...		Potri.006G173800 [exp]	32.48	0.8284
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.012G044300 [exp]	35.41	0.8036
					Potri.006G002401 [exp]	37.04	0.7982

Compare expression of checked genes

Potri.018G112100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.