Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AHA6.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 1528 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1512 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 1505 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1449 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1446 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1433 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G24520 1414 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G47950 1409 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 1409 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G60330 1268 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188600 [exp] 1665 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1605 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G165900 [exp] 1499 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1498 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G275000 [exp] 1498 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1469 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.015G066000 [exp] 1417 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1412 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1380 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 1513 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 1486 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1468 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10003259 [exp] 1407 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1407 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 1362 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 1344 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10019593 [exp] 1320 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10040166 [exp] 1313 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1311 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G112400.1 pacid=42800886 polypeptide=Potri.018G112400.1.p locus=Potri.018G112400 ID=Potri.018G112400.1.v4.1 annot-version=v4.1 ATGGGGGACGTTTCTCTGGAACAGATAAAAAATGAGAATATTGATCTTGAGAGAATTCCTGTTGAAGAGGTTTTTGACCAGCTAAGATGTACAAGGGAAG GGTTGACCAGCGCACAAGGCGAGGAGAGGCTTAAGATCTTTGGCCCCAACAAGCTAGAGGAGAAAAAAGAGTGCAAATTTCTCAAGTTCTTGGGTTTCAT GTGGAATCCTTTATCATGGGTCATGGAAGCAGCTGCCATAATGGCCATTGCTTTGGCCAATGGAGGAGGCAAACCTCCGGATTGGCAAGACTTTGTTGGT ATCGTTGTGTTGCTTATCATCAACTCCACCATCAGCTTCATCGAAGAAAACAATGCAGGCAACGCCGCCGCTGCTTTGATGGCCGGTCTTGCCCCGAAAA CCAAGGTTTTGAGGGATGGAAAATGGAGTGAGCAGGATGCAGCAATTCTGGTACCAGGAGACCTGATCAGCATCAAGTTGGGAGATATTATCCCAGCTGA TGCTCGTCTCATGGAGGGAGATCCGCTCAAGATCGATCAGTCTGCTCTGACCGGTGAATCCCTTCCAGTCACAAAGAATCCTGGAGATGGAATTTTCTCC GGCTCAACCTGCAAGCAAGGTGAAATCGAGGCTGTTGTCATCGCCACTGGTGTTCATACCTTCTTCGGCAAGGCAGCTCACCTTGTTGACAACACCAATA ATGTTGGTCATTTCCAAAAGGTGCTGACAGCTATTGGTAACTTCTGTATCTGCTCAATTGCTATCGGTATGCTGATTGAAATTATAGTGATGTACCCAAT CCAGAACAGGAGGTACAGAGAGGGTATCGATAACCTCTTGGTGCTTCTCATAGGTGGTATCCCAATTGCCATGCCTACAGTCTTGTCCGTGACAATGGCT ATTGGGTCTCACCGTCTATCACAGCAAGGTGCCATCACCAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTCTTATGTAGCGACAAGACTG GAACTCTAACCCTCAACAAGCTTACCGTTGACAAGAACCTTATTGAGGTGTTCGCAAAGGACATGGACAGGGATACCCTTTTATTACATGCTGCCAGGGC TGCCAGAATTGAGAATCAGGATGCCATTGACGCTTCAATTGTTGGGATGTTGGGCGACCCCAAGGAGGCAAGAGCTGATATCACCGAAGTGCATTTCTTA CCCTTCAACCCTGTGGAAAAGCGCACTGCAATCACTTACTATGACAGCAAAGGTGACTGGTACAGAAGCAGCAAGGGAGCTCCTGAGCAGATTATCGACC TCTGCCAACTCGAAGGCGAGATGGAGAAAAAGGCCCATGAAATCATTGACAACTTTGCCGATCGTGGCCTTCGTTCCCTAGGAGTTGCTCGCCAGACGAT TCCAGAGAAGAACAAGGAAAGCGAAGGAGGACCATGGGAGTTTGTGGGTCTCTTGCCTCTTTTCGACCCTCCAAGGCATGATAGTGCTGAGACTATCCGC CGAGCCCTTGACCTTGGTGTCAATGTTAAAATGATAACTGGCGATCAACTTGCTATTGGCAAAGAGACTGGCCGCAGGCTTGGGATGGGTACAAATATGT ATCCTTCATCATCTCTCCTTGGTAACAGCAAGGATGAGGGCATTGCTGGCATTCCAGTTGATGAGCTCATCGAGAAGGCTGATGGATTTGCCGGGGTCTT CCCTGAACACAAGTATGAGATTGTTAAAAAGCTACAAGAGATGAAGCACATTTGTGGTATGACAGGAGATGGTGTCAATGATGCGCCGGCATTGAAGAAG GCAGACATTGGTATTGCTGTGGCGGATGCAACTGATGCTGCTAGGGGTGCCTCGGATATTGTGTTGACAGAACCAGGTTTGAGTGTTATTATCAGTGCTG TACTGACAAGCAGAGCCATCTTCCAGAGGATGAAGAACTACACAATCTATGCTGTTTCCATCACAATCCGTATTGTGCTGGGATTCTTGCTTGTTGCACT TATATGGAAGTTCGACTTCTCACCATTCATGGTCCTGATCATTGCTATTCTCAATGACGGAACCATCATGACCATCTCCAAAGATAGAGTCAAGCCATCT CCCGTGCCTGACTCATGGAAGCTCAAGGAAATCTTTGCCACAGGCGTTGTCCTTGGAACCTATATGTCAATCATGACTGTGGTGTTCTTCTGGCTTGTTC ATGATACAGATTTCTTCTCCGAGAAGTTCGGTGTGAGGTCAATCAGAGGTAAACCAGATGAGCTCACAGCAGCTCTTTACCTTCAAGTGAGCATCATCAG TCAGGCACTCATCTTTGTAACCAGGTCAAGGAGCTGGTCCTTTGTTGAGTGCCCTGGTCTCTTACTTGTTGGTGCCTTCATTGCAGCACAGTTGATGGCA ACTATCATTGCTGTATATGCAACCTGGTCCTTTGCAAGAATCCAAGGGGTTGGTTGGGGATGGGCAGGAATCATCTGGATTTACAGCATTATCACCTACA TCCCTCTCGATATCCTCAAGTTCATCATTCGCTATGCATTGACTGGGAAGGCCTGGGATAATCTGCTGCAAAACAAGACTGCTTTCACCACCAAGAAGGA CTATGGAAAGGGTGAGAGAGAAGCTCAATGGGCTACCGCTCAACGTACTCTTCATGGTCTACAACCCCCAGAAACCATGTTCAATGACAAGACCACCTAC AGAGAGTTGAATGAGCTAGCTGAGCAGGCTAAGAAGCGTGCCGAAGTAGCAAGGCTCAGAGAGCTTCACACATTGAAGGGACATGTTGACTCAGTGGTGA AGATGAAGGGGCTAGACATTGAGACCATCCAACAACACTACACGGTCTAA
AA sequence Show only first row Show all	>Potri.018G112400.1 pacid=42800886 polypeptide=Potri.018G112400.1.p locus=Potri.018G112400 ID=Potri.018G112400.1.v4.1 annot-version=v4.1 MGDVSLEQIKNENIDLERIPVEEVFDQLRCTREGLTSAQGEERLKIFGPNKLEEKKECKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVG IVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDLISIKLGDIIPADARLMEGDPLKIDQSALTGESLPVTKNPGDGIFS GSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNNVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQNRRYREGIDNLLVLLIGGIPIAMPTVLSVTMA IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKDMDRDTLLLHAARAARIENQDAIDASIVGMLGDPKEARADITEVHFL PFNPVEKRTAITYYDSKGDWYRSSKGAPEQIIDLCQLEGEMEKKAHEIIDNFADRGLRSLGVARQTIPEKNKESEGGPWEFVGLLPLFDPPRHDSAETIR RALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGNSKDEGIAGIPVDELIEKADGFAGVFPEHKYEIVKKLQEMKHICGMTGDGVNDAPALKK ADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPS PVPDSWKLKEIFATGVVLGTYMSIMTVVFFWLVHDTDFFSEKFGVRSIRGKPDELTAALYLQVSIISQALIFVTRSRSWSFVECPGLLLVGAFIAAQLMA TIIAVYATWSFARIQGVGWGWAGIIWIYSIITYIPLDILKFIIRYALTGKAWDNLLQNKTAFTTKKDYGKGEREAQWATAQRTLHGLQPPETMFNDKTTY RELNELAEQAKKRAEVARLRELHTLKGHVDSVVKMKGLDIETIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	0	1	Pt-AHA6.3
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	1.73	0.9597
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033700 [exp]	2.00	0.9559
					Potri.002G193400 [exp]	3.46	0.9216
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	4.47	0.9377	FLA14.5
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	5.29	0.9211
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	7.07	0.9154	AGL11.1
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	7.07	0.9373
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	10.24	0.8993
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	11.61	0.9172
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	13.67	0.9050

Compare expression of checked genes

Potri.018G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.