Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80710 512 / 1e-178 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G58760 78 / 6e-15 DDB2 damaged DNA binding 2 (.1) AT2G16780 66 / 2e-11 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G10580 64 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 61 / 1e-09 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G34280 51 / 2e-06 transducin family protein / WD-40 repeat family protein (.1) AT5G54520 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 49 / 5e-06 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 49 / 1e-05 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G29260 46 / 4e-05 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251000 [exp] 84 / 9e-17 AT5G58760 774 / 0.0 damaged DNA binding 2 (.1) Potri.010G064600 [exp] 60 / 3e-09 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 59 / 4e-09 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 54 / 1e-07 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 54 / 2e-07 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G087200 [exp] 51 / 1e-06 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 49 / 9e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G248100 [exp] 48 / 1e-05 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G045800 [exp] 48 / 1e-05 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036319 [exp] 491 / 6e-169 AT1G80710 415 / 5e-139 DROUGHT SENSITIVE 1 (.1) Lus10036179 [exp] 78 / 7e-15 AT5G58760 776 / 0.0 damaged DNA binding 2 (.1) Lus10038314 [exp] 74 / 1e-13 AT5G58760 759 / 0.0 damaged DNA binding 2 (.1) Lus10030869 [exp] 62 / 7e-10 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 61 / 1e-09 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 60 / 2e-09 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 60 / 3e-09 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10026603 [exp] 50 / 6e-06 AT4G34280 777 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10013890 [exp] 49 / 6e-06 AT4G34280 758 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10015340 [exp] 48 / 2e-05 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G112500.1 pacid=42801075 polypeptide=Potri.018G112500.1.p locus=Potri.018G112500 ID=Potri.018G112500.1.v4.1 annot-version=v4.1 ATGGCGACTCAGAAACTAACAGAATACGAGATAAAGAGACTCGAAAACATTCGAAGAAACGATGAAATGTTGGCTGCTCTTCAACTCCACGCTAAAGCCT CTCTTCTTTCTAATGCCACCAAACGCTCAAGAGATGGGTCAGCAAAGTCATATAAAGTTAGTCCAGAGAAGAAACCCAAAAAAGCTGAGACTCCAATTGT TATAAGACGATCTTTGCGTACACGAGGAATGCCGCCTGATTCTAATTGTTTAGATGCTGATTCTAATGAGAATTCTGATAAAACAACTCTTAATCAGACT TCAATTAGCAGAGAAAAGCCTTCGCCCTGTGTCATGGGTCCGCTGAAAATGAAGGATGCTCATGACGGAACTGGTTCTGATAGAGAATTTATAGACACAC TTTTGTCTTTTGAAAGGAAACCCAAATTGGGTGTTGGAGTTAAAGAGGAGTTTGATTGTTTTAAGGTTGTTAAAGAGGAGGGACATGATAGGGTTTTGTG CGGCCCAGTTAAGAGGAAGGTTGAAAATGATAATTTGAATTGTGGGATTAAGATAGAGAAGAGGGAATTTGAGGGTTGTGTTGATTTGGGATCGATGAGT TTGGAGCCAGAGAATATTGCAAGGATTATGCCAGGGAGGATAATGACAGTGAGATTTTTTCCGCGGAACGATATAAACATAGTTGCAGCTGGGAATAAGC TTGGCAATGTTGCATTTTGGAATGTGGATAGTGAAGGGGAGAAAGGTGACGGGATATTTTTGTATCGCCCGCATACTGGTCCAATTTCTGGGATTTTGTT CCAGCAATCTTGTTTATCCAAGATCTTCACCAGCTGCTATGATGGATATCTCCGTTTAATGGATGCTGAAAAGGAAGTATTTGATCTAGTACACTCCTGT GATGATGCTATATTTTCTCTTTCTCAACATCCAAATGATGTGAAGAGCTTATATTTTGGCGAGGGTCGTGGAGGATTGAGTGTCTGGGATGATAGGACAG GAAGTGTTTCATCCCAATGGACCCTGCATGAAGACAGAATCAACACCATAGATTTCAATCCACAAAACCCTAACATTATGGCCACTAGTTCCTCAGATGC AACGGTTTGCCTTTGGGACTTGAGAAAAGTGGATGCAGGTAAACCCAAAAGTTTAAAGATTGTAAATCATGAGAGGGCTGTGCATTCTGCTTACTTCTCA CCCTCTGGAAGCTCACTTGCAAGCACAAGTTTTGATGACACAGTTGGTATACTAAGTGGAGTTAATTTCGAGGATGCTTCTAGGGTGCACCATTGTAATC AGACAGGTCGATGGATTTCTAGTTTCAGAGCAACATGGGGTTGGGATGATTCGTTTGTCTACGTTGGCAATATGAAAAGAGGAGTTGATATCATTTCTCC AGCTCAAAGACGAGTAATCAGGACTCTACAGAGTCCCCACATGACTGCTATTCCATGCAGATTTCATGCACATCCTTTCAGGGTTGGGATGCTAGCAGGA GCAACCGGTGGTGGCCAGGTTTACATTTGGACGTCAAGCTAG
AA sequence Show only first row Show all	>Potri.018G112500.1 pacid=42801075 polypeptide=Potri.018G112500.1.p locus=Potri.018G112500 ID=Potri.018G112500.1.v4.1 annot-version=v4.1 MATQKLTEYEIKRLENIRRNDEMLAALQLHAKASLLSNATKRSRDGSAKSYKVSPEKKPKKAETPIVIRRSLRTRGMPPDSNCLDADSNENSDKTTLNQT SISREKPSPCVMGPLKMKDAHDGTGSDREFIDTLLSFERKPKLGVGVKEEFDCFKVVKEEGHDRVLCGPVKRKVENDNLNCGIKIEKREFEGCVDLGSMS LEPENIARIMPGRIMTVRFFPRNDINIVAAGNKLGNVAFWNVDSEGEKGDGIFLYRPHTGPISGILFQQSCLSKIFTSCYDGYLRLMDAEKEVFDLVHSC DDAIFSLSQHPNDVKSLYFGEGRGGLSVWDDRTGSVSSQWTLHEDRINTIDFNPQNPNIMATSSSDATVCLWDLRKVDAGKPKSLKIVNHERAVHSAYFS PSGSSLASTSFDDTVGILSGVNFEDASRVHHCNQTGRWISSFRATWGWDDSFVYVGNMKRGVDIISPAQRRVIRTLQSPHMTAIPCRFHAHPFRVGMLAG ATGGGQVYIWTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	0	1
AT4G39380			unknown protein		Potri.007G077700 [exp]	4.24	0.7759
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	5.38	0.8267
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.003G212600 [exp]	10.24	0.7321
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	11.13	0.7358
AT1G19980			cytomatrix protein-related (.1...		Potri.005G239500 [exp]	11.61	0.7221
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	15.55	0.7695
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	16.97	0.8085
AT4G13690			unknown protein		Potri.003G177900 [exp]	18.54	0.8032
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.015G012600 [exp]	20.88	0.6783
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	27.83	0.8019

Compare expression of checked genes

Potri.018G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.