Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22650 498 / 1e-175 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036320 [exp] 516 / 0 AT2G22650 479 / 5e-168 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13454 [poplar] [flax] NAD_binding_9 FAD-NAD(P)-binding
Representative CDS sequence Show only first row Show all	>Potri.018G112600.1 pacid=42801145 polypeptide=Potri.018G112600.1.p locus=Potri.018G112600 ID=Potri.018G112600.1.v4.1 annot-version=v4.1 ATGCTTCTTTCTGATACTTTAACTCCGGCTGGCCATGGTCAACTGGGAAAAATTATATCCCCACTCTCTCTCTCCCCTTCTTTCTCTTCACGTCCCCTGA GATACGCAGTGCTTGGTGCTGGCTTTGCTGGTCTCTCCGTTACCTGGCATTTGCTGAAGAAGAGTCCAAAAGAGAAGGAAATGAGAATAGACATATATGA TGAAGTGGGTATAGGAGGAGGTGCTTCTGGTATTTCTGGAGGTCTTCTTCACCCTTATTCTCCTAAAGCTAAACTGCTTTGGAGAGGAGCTGAGTGTTGG AAAGAAAGTTTAATGCTTTTAAATGTCGCGGAGGCGGCAGCTAGATTATCTGGTGTAGATGATTCTGATGATAGTTTTATTGTTAGGAGAAGGGGCATCT TGAGGCCAGCAGCAAACACCAAGAATTTGATTGTATTGACCGATAATGCCCAGAATTACGATGCCAGTTGCAGAATTGAGACCATTGATGAGGACACTGC CCAAAAGCTTGTGCCAAAAATACATGTACCTTTTAACCCAGCCTTTTATATGCCTGAAGCTGTAAATGTCCATCCTCTGCGCTATCTTCAGGCACTCTTC TTAGCATGTCAGAATGTGGTGAATGAATCATCCACTTCTAGCCATGGACAAAAGGAGCTATATTTGCACAAAAAATCAGTTCAAAACCTCCTTGAATTGG AAGGTGATGGCGAATATGATGCAGTGATAATCTGTCTAGGTGCCAAAGCAGACATGCTACCAGAGCTCTCAGGGAGGCTTCCGTTGAGGACATGCAGAGG TGTAATTGCCCACCTGCAGTTGCCTGCTAATATAAGGGAAGAATATCCAGACTATGCCCCTTCAATATTATCAGATGCATGGCTCGCCATCCAGGGAAGC CGAAGTTTATATATGGGCTCAACATGGGAATGGAAATCAAGGAATTCTAATCCAAATGTTTCAGTGGATGAAGCTTCAAAAGCTCTTCAAGAGCTTCTGC CAAAGGTGTCTGCCTTTTATCCAGCAATAAAGGATTGGACTTTCACCAAAGCGAACGCAGGTTTAAGAGCAATGCCACCATTAACTGCCCATGGATCACT TCCACTTTTGGGCTGCGTCAATTATTTTGTAGGCGAGAATGTTGCCGGTAAATACTGGTTATTTGGAGGACTTGGTTCAAGAGGTTTGTTGTATCATGCT TGGCTTGGAAATTTGATGGCGCAGGCTGTTATTTCTTGTAATGAACAATTGATCCCGTCTGAACTGACTGCTTGGAAGAACATAAATAGATGA
AA sequence Show only first row Show all	>Potri.018G112600.1 pacid=42801145 polypeptide=Potri.018G112600.1.p locus=Potri.018G112600 ID=Potri.018G112600.1.v4.1 annot-version=v4.1 MLLSDTLTPAGHGQLGKIISPLSLSPSFSSRPLRYAVLGAGFAGLSVTWHLLKKSPKEKEMRIDIYDEVGIGGGASGISGGLLHPYSPKAKLLWRGAECW KESLMLLNVAEAAARLSGVDDSDDSFIVRRRGILRPAANTKNLIVLTDNAQNYDASCRIETIDEDTAQKLVPKIHVPFNPAFYMPEAVNVHPLRYLQALF LACQNVVNESSTSSHGQKELYLHKKSVQNLLELEGDGEYDAVIICLGAKADMLPELSGRLPLRTCRGVIAHLQLPANIREEYPDYAPSILSDAWLAIQGS RSLYMGSTWEWKSRNSNPNVSVDEASKALQELLPKVSAFYPAIKDWTFTKANAGLRAMPPLTAHGSLPLLGCVNYFVGENVAGKYWLFGGLGSRGLLYHA WLGNLMAQAVISCNEQLIPSELTAWKNINR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22650			FAD-dependent oxidoreductase f...		Potri.018G112600 [exp]	0	1
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	6.63	0.9251
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.004G209400 [exp]	7.00	0.9380
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	11.83	0.9064
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	13.63	0.9366
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	24.49	0.9291
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.019G044200 [exp]	25.29	0.9230
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	30.49	0.9247
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	34.20	0.8921
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	36.55	0.8761
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	37.78	0.9243

Compare expression of checked genes

Potri.018G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.