Plant FIBer expression Database

Potri.018G112701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005028
[exp]
47 / 6e-07 AT2G29880 45 / 2e-05 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G112701.1 pacid=42800600 polypeptide=Potri.018G112701.1.p locus=Potri.018G112701 ID=Potri.018G112701.1.v4.1 annot-version=v4.1
ATGATTCTACAACAGGGAAAGTTGAAGCAGCTGATGAACACTGGAGGGTGTTGTCCAAGGGAAAGAGTGATAATCGTCTCAGAGAATGTGTCTGAGTCTG
AACCTAGTGAATCTTCCAAGTCTGGCCACAAGAAAAGGGCTAGAAGGACCTGTAGCAGTATTTTAGAGAAAGCTTTGGTAACTATGGGGGAGCAATCAAA
GAGAAACAATGATTTGCTTGGACACAGGTTAGCAACATCATCATCCACAAGGGTTAGTGGAGTTGGGGCAAATTCACTTACTAATAGTGAAGTTAATGCC
ATGAAAGAGTGTTTAAAGGCTTTGAATGCTTTGGGAATTACTGGTGCCCCATATGGGAAGGCTGTGAAGGCCCTTCATGACTCCACCTTGTATAGAGAGA
TTTTCCTGGACATGCCCGATGAGAGGAAGAAGGATTGGATATCGACTCTTTAA
AA sequence
>Potri.018G112701.1 pacid=42800600 polypeptide=Potri.018G112701.1.p locus=Potri.018G112701 ID=Potri.018G112701.1.v4.1 annot-version=v4.1
MILQQGKLKQLMNTGGCCPRERVIIVSENVSESEPSESSKSGHKKRARRTCSSILEKALVTMGEQSKRNNDLLGHRLATSSSTRVSGVGANSLTNSEVNA
MKECLKALNALGITGAPYGKAVKALHDSTLYREIFLDMPDERKKDWISTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G112701
[exp]
0 1
AT2G38740 Haloacid dehalogenase-like hyd... Potri.002G135000
[exp]
2.00 0.8989
Potri.016G107750
[exp]
3.16 0.8315
AT3G09270 ATGSTU8 glutathione S-transferase TAU ... Potri.010G061200
[exp]
5.00 0.9030
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.010G061301
[exp]
7.48 0.8661
AT5G44440 FAD-binding Berberine family p... Potri.011G162800
[exp]
13.67 0.8130
AT1G11350 SD1-13, RKS2, C... CALMODULIN-BINDING RECEPTOR-LI... Potri.011G038901
[exp]
15.49 0.7980
AT4G20820 FAD-binding Berberine family p... Potri.001G464800
[exp]
27.71 0.8402
AT5G16770 MYB ATMYB9 myb domain protein 9 (.1.2) Potri.003G094200
[exp]
37.22 0.8360
Potri.010G092950
[exp]
40.98 0.7519
AT1G70890 MLP43 MLP-like protein 43 (.1) Potri.008G131100
[exp]
46.95 0.8062 MLP.2

Potri.018G112701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.