Plant FIBer expression Database

Potri.018G112900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02602 HEM4 Uroporphyrinogen-III synthase HemD
Representative CDS sequence
>Potri.018G112900.1 pacid=42800649 polypeptide=Potri.018G112900.1.p locus=Potri.018G112900 ID=Potri.018G112900.1.v4.1 annot-version=v4.1
ATGACAACAACTACCACCACCATGCACAACCTCACTACCATCACCACCAATAAACCCACCGTAGCCTTCACCACTCCACCAAACTACGCCACCAGACTTT
CCCACCTCTTAACTCTCAAATCCTTCACTCCGTTATGGTGCCCTACCATCACCACCGAACCCACCCAACAGACTCTCTCCTCTCTAGCCCTCCATCTCTC
CCCTCACTCCCTCTCTCTCCTCTCCGCCATTGCCTTCCCTTCCCGCACTGCCATCACCGCATTCTCAACCGCTGCTCTCTCCCTCACAACCCCTCTCCTA
CCTCCTCGCGAGGACACATTTATCATCGCGGCGCTCGGCAAAGATGTAGAACTGATAGACTCAACTTTCTTGCTTACTTTTTGTGGTGATGATATCAGCT
GGGTGAACGTGTTAGTTCCAACAATAGCAACACCTAGCGGGCTCGTCCAGTTGCTTGGAACTGGACGAGGCCGGAAGGTGTTGTGTCCAGTCCCACGAGT
GGTAGGACTGGAGGAGCCTCCGGTTGTTCCTGATTTTCTCCGGGAACTGGAGGGTGCAGGATGGGTCCCAATTAGAGTTGATGCGTACGAGACGCGGTGG
TTGGGACCCGCCTGCGGGAAGGGAGTTGTGGAGTTGAGTGAGGGGGGATTGTTGGATGCGATGGTGTTTACTAGTAGTGGAGAAGTGGAGGGGTTATTGA
AGAGTTTGAGAGAGTTTGGGTGGGACTGGGAGATGGTGAGGAGAAGGTGGCCTCATTTGGTGGTGGCAGCACACGGGCCGGTGACCGCCGCAGGAGCTGA
GAGGTTGGGAGTGACTGTTGATGTTGTGAGTGGAAGGTTTGATAGTTTTCAAGGTGTTGTGGACGCTGTTGAAGCCAAGTTAAGAGGTTTGGATTCTAGC
TGTATGTGA
AA sequence
>Potri.018G112900.1 pacid=42800649 polypeptide=Potri.018G112900.1.p locus=Potri.018G112900 ID=Potri.018G112900.1.v4.1 annot-version=v4.1
MTTTTTTMHNLTTITTNKPTVAFTTPPNYATRLSHLLTLKSFTPLWCPTITTEPTQQTLSSLALHLSPHSLSLLSAIAFPSRTAITAFSTAALSLTTPLL
PPREDTFIIAALGKDVELIDSTFLLTFCGDDISWVNVLVPTIATPSGLVQLLGTGRGRKVLCPVPRVVGLEEPPVVPDFLRELEGAGWVPIRVDAYETRW
LGPACGKGVVELSEGGLLDAMVFTSSGEVEGLLKSLREFGWDWEMVRRRWPHLVVAAHGPVTAAGAERLGVTVDVVSGRFDSFQGVVDAVEAKLRGLDSS
CM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G112900
[exp]
0 1
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Potri.018G008000
[exp]
13.92 0.7300
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050000
[exp]
23.66 0.8265
Potri.008G218622
[exp]
24.41 0.8356
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050300
[exp]
27.23 0.8175
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.011G050100
[exp]
27.65 0.8171
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Potri.007G144900
[exp]
34.77 0.7578
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Potri.001G222900
[exp]
36.33 0.7988
AT5G54770 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4,... Potri.011G134900
[exp]
44.54 0.8316
AT5G10625 unknown protein Potri.006G276100
[exp]
47.48 0.7723
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Potri.001G223300
[exp]
59.86 0.7695 PLIN-GEN.27

Potri.018G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.