Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51350 1014 / 0 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 646 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 552 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 537 / 2e-175 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 517 / 5e-168 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 515 / 3e-167 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 494 / 2e-159 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 491 / 3e-158 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 434 / 2e-135 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G25790 429 / 5e-135 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189000 [exp] 1662 / 0 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 673 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 670 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 591 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 587 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 585 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G241500 [exp] 538 / 2e-176 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 532 / 4e-174 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 515 / 2e-167 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019067 [exp] 1324 / 0 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10036321 [exp] 1299 / 0 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027221 [exp] 644 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 641 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027951 [exp] 566 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 563 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 552 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039641 [exp] 520 / 2e-168 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 508 / 1e-164 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 506 / 4e-164 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G113000.1 pacid=42801833 polypeptide=Potri.018G113000.1.p locus=Potri.018G113000 ID=Potri.018G113000.1.v4.1 annot-version=v4.1 ATGGAGATTTTCCATTGCATGTACTTCGGGGTGCTCTTGGCCTTGACATGCATAGTTGCGGTTGTTTTGGCTGATGATCCTTACTCAGAGGCTCTTTTGA GCTTAAAATCTGAGCTCATTGATGATGATAGCAGCTTGGATGATTGGCTAGTGCCTCCTGGAGGAAACACAGAAGAGAAAATCCAAGCATGCTCTTGGTC TGGTGTCAAATGCGACAAGAACTCCACAGTTGTTGTTGCTTTAGACCTGTCTATGAAGAATCTTGGAGGTGAATTGACAGGGAAACAGTTTGGTGTCTTT GCGGAGCTTGTTGATCTTAACCTCAGCTACAACTCATTCTCGGGGCAGCTTCCAGTGGGAATATTTAACCTCACAAATCTAAAAAGCTTTGATATCAGCA GAAACAATTTTTCTGGCCAGTTTCCGGGTGGAATCTCCAGTCTTCGTAACCTGGTTGTGCTTGATGCCTTCAGCAATAGCTTTTCTGGGCCGTTGCCAGT TGAGGTTTCCCAGCTTGAATATCTCAAAGTTTTCAATCTGGCTGGGAGTTACTTTGATGGACCAATCCCATCGGAGTATGGTTCTTTCAAGAGCCTTGAG TTTATTCACCTGGCAGGTAACTCCCTCAGTGGTAATATACCGCCGGAGCTAGGCCAACTCAAGACAGTGACCCATATGGAGATTGGCTACAATTCATACG AGGGAAGTATCCCATGGCAAATGGGTAACATGAGTGAGCTTCAATATCTTGATATAGCTGGTGCAAATCTATCTGGCCCAATACCAAAGCAACTCTCGAA TCTCACCAAGCTAGAATCACTATTTCTCTTCAGAAACCAGCTCACTGGATTGGTCCCCTGGGAGTTTAGACAAATTGTGCCTCTCGCCAGCTTAGATCTT TCTGATAATCAACTTTCTGGGCCTATACCTGAGAGCTTTGCAGAGTTGAAGAATCTCAAGCTGCTAAGCCTTATGTACAATGAAATGAATGGCACTGTTC CACCAGGCATTGGTCAGCTTCCTTCACTGGAAACGCTCCTTATATGGAACAATTTCTTCTCTGGTTCACTTCCAAATGACTTGGGCAAGAACTTGAAGCT GAAATGGGTGGATGTTTCAACCAACAATTTCATCGGCAGCATTCCACCGGATATTTGTGCAGGAGGGCTAGTAAAACTGATCCTGTTTTCAAATAACTTT ACAGGCAGTCTCACACCATCCATCTCCAATTGCTCTTCGCTTGTGCGTCTACGAATTGAAGACAATTCCTTCTCCGGTGAGATCCCTCTTAAATTCAGCC ACCTTCCTGATATCACATATGTGGACCTTTCCAGGAACAAGTTTACCGGTGGGATTCCCACAGATATCTCTCAAGCTTCCCGTCTGCAGTACTTCAATAT CTCCAATAATCCAGGGCTTGGAGGTATGATCCCAGCAAAAACATGGTCTTTGCAGCTTCTCCAAAATTTCTCAGCGTCAGCATGTAACATCTCAGGCAAT CTTCCTCCATTCCACTCCTGCAAATCTGTTTCTGTTATTGAATTGCGCATGAACAATCTATCAGGAAGTGTCCCTGGAGATGTTTCTAATTGCCAAGCTC TTGGAAAGATGGATTTAGCTGATAATAAGTTTACTGGTCATATACCAGAAGATCTTGCAAGCCTTCCAGCTTTAAGTGTCCTAGACCTGTCACATGATAA TTTCAGTGGTCCAATACCAGCGAAGTTTGGTGCTTCTTCAAGCTTGGTACTTCTAAACGTGTCTTTCAATGATATCTCCGGTTCCATTCCCTCCAGCAAT GTGTTTAAACTGATGGGAACCAGTGCATATCAGGGAAATCCGAAGCTATGTGGAGCACCTTTGGAACCATGTTCTGCTTCCATCACGATATTTGGCAGCA AAGGCACAAGAAAGCATACGTGGATTCTGCTACTATGTGCAGGGGTGGTTGTATTAATTGTGGCATCAGCCTTCGGGGTATTCTACATCCGGAGAGGAAG TAAAGGTCACTGGAAAATGGTCTCCTTCAGTGGACTCCCCCGATTTACAGCAAGTGATGTTTTGAGGAGCTTTAGTTCCACAGAATCAATGGAAGCAGTG CCACCAGAATCTAATTCAGTTTGCAAAGCAGTGCTGCCCACAGGAATAACAGTTTCAGTGAAAAAGATTGAACTGGAAGCAAAGACAATGAAGAAAGCCA CAGAATTTATGACACGACTGGGTGTTGCAAGACATAAAAATTTGATTAGATTGCTAGGGTTTTGCTACAACAAGCAACTAGCTTATGTCCTATATGATTA TCAGCCTAATGGTAACTTGGCTGAAAAAATCACTTTGAAGAGAGATTGGGTGGCCAAGTACAAACTCGTCATTGGCATTGCCAGGGGACTGTGCTTCCTT CACCATGACTGCTATCCGGCAATTCCTCATGGAGATTTGAAGTTGAGTAACATATTGTTCGACGAAAATATGGAGCCTCATTTGGCTGATTTTGGATTCA AATACCTGGTAGAAATGACTAAAGGCTCATCTCCTGCAACAATTTTCATGGGAGAAACAGGCGAACTGAACAGTTCCATAAAAGAGGAGCTCTACATGGA CATATACAGATTTGGGGAGATCATTCTGCAAATCCTGACTAATTTGGCAAACGCAGGAGGGACAATACATAGCAAGCCTAAGGAGGTACTTCTAAGAGAA ATATATAGTGAGAATCAAACTGGTTCTACTGATTCAACACAAGAAGAGATAAAACTGGTTCTTGAAGTTGCTTTGCTCTGCATAAAAAGTAGGCCATCTG ATCGGCCATCCATGGAAGACGCACTGAAGCTTTTATCAGGGATGAAGTCACAAAGAAAATAG
AA sequence Show only first row Show all	>Potri.018G113000.1 pacid=42801833 polypeptide=Potri.018G113000.1.p locus=Potri.018G113000 ID=Potri.018G113000.1.v4.1 annot-version=v4.1 MEIFHCMYFGVLLALTCIVAVVLADDPYSEALLSLKSELIDDDSSLDDWLVPPGGNTEEKIQACSWSGVKCDKNSTVVVALDLSMKNLGGELTGKQFGVF AELVDLNLSYNSFSGQLPVGIFNLTNLKSFDISRNNFSGQFPGGISSLRNLVVLDAFSNSFSGPLPVEVSQLEYLKVFNLAGSYFDGPIPSEYGSFKSLE FIHLAGNSLSGNIPPELGQLKTVTHMEIGYNSYEGSIPWQMGNMSELQYLDIAGANLSGPIPKQLSNLTKLESLFLFRNQLTGLVPWEFRQIVPLASLDL SDNQLSGPIPESFAELKNLKLLSLMYNEMNGTVPPGIGQLPSLETLLIWNNFFSGSLPNDLGKNLKLKWVDVSTNNFIGSIPPDICAGGLVKLILFSNNF TGSLTPSISNCSSLVRLRIEDNSFSGEIPLKFSHLPDITYVDLSRNKFTGGIPTDISQASRLQYFNISNNPGLGGMIPAKTWSLQLLQNFSASACNISGN LPPFHSCKSVSVIELRMNNLSGSVPGDVSNCQALGKMDLADNKFTGHIPEDLASLPALSVLDLSHDNFSGPIPAKFGASSSLVLLNVSFNDISGSIPSSN VFKLMGTSAYQGNPKLCGAPLEPCSASITIFGSKGTRKHTWILLLCAGVVVLIVASAFGVFYIRRGSKGHWKMVSFSGLPRFTASDVLRSFSSTESMEAV PPESNSVCKAVLPTGITVSVKKIELEAKTMKKATEFMTRLGVARHKNLIRLLGFCYNKQLAYVLYDYQPNGNLAEKITLKRDWVAKYKLVIGIARGLCFL HHDCYPAIPHGDLKLSNILFDENMEPHLADFGFKYLVEMTKGSSPATIFMGETGELNSSIKEELYMDIYRFGEIILQILTNLANAGGTIHSKPKEVLLRE IYSENQTGSTDSTQEEIKLVLEVALLCIKSRPSDRPSMEDALKLLSGMKSQRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	0	1
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	1.41	0.8699
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	1.73	0.9176
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.007G038100 [exp]	3.46	0.8534
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.007G009200 [exp]	4.47	0.8592
AT2G19090			Protein of unknown function (D...		Potri.006G077000 [exp]	5.83	0.8307
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	7.21	0.8194
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.002G241300 [exp]	7.54	0.8661
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.011G075600 [exp]	8.12	0.7749
AT3G45070			P-loop containing nucleoside t...		Potri.017G100400 [exp]	9.00	0.8465
AT2G23790			Protein of unknown function (D...		Potri.002G133400 [exp]	9.16	0.8121

Compare expression of checked genes

Potri.018G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.