Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35170 837 / 0 adenylate kinase family protein (.1.2) AT5G47840 275 / 2e-88 AMK2 adenosine monophosphate kinase (.1) AT5G50370 126 / 9e-33 Adenylate kinase family protein (.1) AT5G63400 125 / 2e-32 ADK1 adenylate kinase 1 (.1.2) AT2G37250 121 / 1e-30 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 111 / 6e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 99 / 3e-23 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G25280 99 / 7e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60180 96 / 1e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01820 62 / 1e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078200 [exp] 267 / 4e-85 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.013G103400 [exp] 265 / 4e-84 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.006G189201 [exp] 177 / 6e-53 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 134 / 2e-35 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 125 / 3e-32 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.008G046100 [exp] 115 / 2e-28 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 110 / 1e-26 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.014G104700 [exp] 102 / 1e-24 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 92 / 3e-21 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019071 [exp] 769 / 0 AT5G35170 720 / 0.0 adenylate kinase family protein (.1.2) Lus10036326 [exp] 707 / 0 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10037995 [exp] 229 / 1e-71 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009228 [exp] 222 / 7e-68 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10009478 [exp] 212 / 1e-65 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 212 / 3e-64 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10016757 [exp] 134 / 2e-35 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 132 / 9e-35 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10023476 [exp] 114 / 5e-28 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10040358 [exp] 114 / 1e-27 AT2G37250 405 / 1e-143 adenosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00406 [poplar] [flax] ADK Adenylate kinase CL0023 [poplar] [flax] PF09353 [poplar] [flax] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Potri.018G113400.2 pacid=42801519 polypeptide=Potri.018G113400.2.p locus=Potri.018G113400 ID=Potri.018G113400.2.v4.1 annot-version=v4.1 ATGTTACCCTCTTCAGTGTCCTCTTTCCACACTACCAATGCCCATTCCACCCCTCTCTCTCCCCTCTCCACTTTCTCTTCCCTCTCTGCCTCCTCCTCCT CTTCTTTTTCATCATCTCTCTCTTTCCAACAATCTTCTCTTCAACATCGCCATCTTGTCTCCTTTGGCCCCCGTTCCAAAACCCTTTTCGGGATAAACTC CAAACCCAAGGGAATATTGAGGGTGAGTTGTTCCACAAGTGGGCCTTTGAAGGTGATGATATCAGGTGCACCAGCATCTGGCAAAGGCACTCAATGTGAA CTAATTGTCAAGAAGTTTGGATTGGTGCACATATCAACTGGTGATCTTCTAAGAGCTGAAGTATCTGCGGAGACAGAAATTGGCAATAAAGCAAAAGAGT TCATGAATGCCGGTCGTCTGGTTCCTGATGAAATTGTGACAGCTATGGTGACAGCAAGATTATCATTGGAAGATGCAAAGGAAAAAGGATGGCTTCTAGA TGGCTATCCACGGAGTTCTGCCCAAGCAGAAAGTCTTGAAAAACTGAACGTTAGGCCAGATATCTATGTTGTATTGGATGTTCCTGATGAAATTCTGATC GACAGATGTGTTGGTAGAAGGCTTGACCCAGAGACAAGAAAGATTTACCATGTGAAAAATTTCCCTCCTGAGACCGAAGAAATTAAAGCAAGACTTATAA CCCGTCCAGATGACACTGAGGAAAAGGTAAAGGCACGTCTTGATATATACAAGAAAAATGCAGAAGCGATCTTGTCCACCTACTCAAACATTATGGTTAA GCTTGATGGAAACCGGTCAAAAGAAGTAGTCTTCAAAGAAATAGATTCTTTGTTATCTCAAGTGCAGAGAGATGAAGTAAAATTGGTAAAATCTGAAAAT TCAGTTCCTGAAAGTGGAAGTCGCTCTAGTCAGGCATCAGTTAGCCAGGATAAATGGAGAGGAATTCCCACTAGATTAAATAATATCCCTCATTCCAGAG AAATCAGGAATTATTTCTACGATGATGTGCTGCAAGCCACACAGAGAGCTGTAAATGATGGTAGAACAAGACTAAGGGTGGACATTAACATTCCAGAGCT GAACCCGGAAATGGATGTTTATCGGATAGGTACCTTAATGGAACTTGTTCGAGTCATTGCTCTTTCATTTTCAGATGATGGAAAGCATGTCAAGGTTTGT GTTCAAGGGTCTATGGGGAAAGGTGCACTTGCTGGAATGCCTTTGCAACTGGCCGGTACTCGAAATATTCTGGAGTTCATGGATTGGGGTGATTATGGTG CCAAGGGAACCTTCATCAAGATTGGTTCTATAGGGGAACAGGAGGTCAGCGAAGAAGATGATATGTTCATCTTAGTGGCTCCTCAAAATGCAGTAGGGAA CTGTATCATAGAAGATCTAAAAGCCATGACTGTTGCTGCTGGGAGCCGACCAGTTATTCTTATTAATCCAAAGCTCAAGGACTTACCTGGTTCAAGTGGT ATTATGCAAACAATGGGCCGGGACAAGAGACTGGAGTATGCTGCTTCCTTTGAAAGTTGCTATTTCTTCCGCCTTCTCTATTATGCAGGAACTCAGTATC CTATTATGGGAGCTCTCAGGATGTCTTACCCCTATCGTTATGAGCTATACAAGAGAGTGGATCAACCATCAGGGACAGAGAAGTACATGATCTTGTCAAC ATTTTCTGAAAAGCCAAGTACTGATGATGTAAACGATGCATTCATGGGGAGACCTAGAAATGGAGCTAAGAAAGCCTCAGGATTTTGGGGCTTCTTGAGT AGTGTTTTCTGA
AA sequence Show only first row Show all	>Potri.018G113400.2 pacid=42801519 polypeptide=Potri.018G113400.2.p locus=Potri.018G113400 ID=Potri.018G113400.2.v4.1 annot-version=v4.1 MLPSSVSSFHTTNAHSTPLSPLSTFSSLSASSSSSFSSSLSFQQSSLQHRHLVSFGPRSKTLFGINSKPKGILRVSCSTSGPLKVMISGAPASGKGTQCE LIVKKFGLVHISTGDLLRAEVSAETEIGNKAKEFMNAGRLVPDEIVTAMVTARLSLEDAKEKGWLLDGYPRSSAQAESLEKLNVRPDIYVVLDVPDEILI DRCVGRRLDPETRKIYHVKNFPPETEEIKARLITRPDDTEEKVKARLDIYKKNAEAILSTYSNIMVKLDGNRSKEVVFKEIDSLLSQVQRDEVKLVKSEN SVPESGSRSSQASVSQDKWRGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLRVDINIPELNPEMDVYRIGTLMELVRVIALSFSDDGKHVKVC VQGSMGKGALAGMPLQLAGTRNILEFMDWGDYGAKGTFIKIGSIGEQEVSEEDDMFILVAPQNAVGNCIIEDLKAMTVAAGSRPVILINPKLKDLPGSSG IMQTMGRDKRLEYAASFESCYFFRLLYYAGTQYPIMGALRMSYPYRYELYKRVDQPSGTEKYMILSTFSEKPSTDDVNDAFMGRPRNGAKKASGFWGFLS SVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	0	1
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.005G083200 [exp]	1.00	0.9862
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	2.44	0.9748
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	3.87	0.9710
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	4.47	0.9733
AT1G75730			unknown protein		Potri.005G238800 [exp]	4.69	0.9668
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	4.69	0.9751
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	5.19	0.9677
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	6.24	0.9628
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	6.92	0.9684	ANTR2.2
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	6.92	0.9645

Compare expression of checked genes

Potri.018G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.