Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09850 523 / 4e-176 D111/G-patch domain-containing protein (.1) AT1G17070 63 / 6e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G24830 59 / 8e-09 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT2G42330 52 / 2e-06 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT3G54230 44 / 0.0004 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189501 [exp] 891 / 0 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 72 / 1e-12 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.013G076000 [exp] 61 / 2e-09 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G016200 [exp] 57 / 4e-08 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036327 [exp] 624 / 0 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 523 / 3e-176 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10019073 [exp] 219 / 3e-62 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000930 [exp] 63 / 6e-10 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002252 [exp] 62 / 2e-09 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10026901 [exp] 56 / 1e-07 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10020095 [exp] 55 / 1e-07 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10023355 [exp] 43 / 0.0007 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01424 [poplar] [flax] R3H R3H domain CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.018G113600.1 pacid=42800714 polypeptide=Potri.018G113600.1.p locus=Potri.018G113600 ID=Potri.018G113600.1.v4.1 annot-version=v4.1 ATGGCAGGAGGAGGTAAGAGAAGACCCAATCACAGCAACGAAAACAGAAACAACCAAAACAACAACAGAAATGCCAAAACCGACAGTGGAGGCGGCGGCA GCAGCAGAAGGCGATCAAAATCAATTCGAAATTCTCTCTTTATCGAAGGCGGTCTCTTGGAAGATTGGTCTCCCAGCCATTCAGGAAGGAGTGTTAATGT GAATTCGAATTCCAAGTGGGTTTCGAAACCGGGGAATTCTAGTCAAGGAAAAGTGGGTTCTAGTTCGAAGAATGGGCCTCGTAAATCCTATGGAAATGCT TTTGGTTATAGCTATGCTTCTTCTGAGCTTCAGGAGGGTGTAGGCAGAGATATGGATGAATCGCAACCTATTGTTGTAGTGGATTCCAAGGAGACTGAGA TTGTTGCATGTTTAGATGAAACACCAACTTCGAAGCCCTATAATTTGAATTCAACTTACAACTACAGTTCAGATTTTCTACTCGGTGAGAGCTCACATAA GGGATTGGGGTTCTGTGAGGAACTTGAGGCTACCACAGGTGCTGAATTATCCTCAAAGCAAATGGAAGAGGAAGAGAAGAACGGATCTTCTTTTGATTCA TCATCTTCTGATAAAGAAATGGATGCAGATGATACTGCTAACTGTGAGGCAGGTGAAGAAATGCTGACTGCAGCATTTTCTCAGAAGAAAAATTCAGCTT TTTTGTCGATTGGAAGCATAAAATTATTCACCCAAGATATATCTGATGGGGAAAGTGATGAGTCACTGGATGAAAGCTCCGAATCTTCTGAACAAGGACA ACGAGTTGTGTCTCAAAGCAATGACTCCGAAGACACATCTGATTGTGAAACAGATGTTGATGATGAAGTTGTAAAAGATTACTTGGAAGGAATTGGAGGC AGCTCCAGTATTTTAGATGCCAAATGGTTGGTAGAAAATGATTTGGGTGATTCGGATAAAGATAGTTCTTCTAGTGGTTGCTTTGATGAGACTCTAAAGA AGTTGAGTGGGATTGCACTCGAGGAGGCATCTAGAAGTTATGGTATGAAGAAACCCCAATCAAGAAAGTGCCATTCTTTGTCTGCCAGAGATGTGTCTCC ATTTTTGGATGATTTTATGCTTGTAAAGGATCCAAGAGCCATCTCTGTCAAAAAGAAGCATGTTGCCCGCTTGCCTCAGTCTTGGCCTTTAGAGGCTCAA AGGAGTAAAAACTTTAGAAATTTTCCTGGTGAAAAAAAGAAACATCGTAAAGAAATGATTGCTGTCAAGCGTCGTCAGAGAATGCTGGCCCGGGGAATTG ATATGGAGAAATTAAATAAGAAACTAGAGCAAATTGTTTTGGATGAAGTGGACATATTTTCTTTTCAACCCATGCATTCACGGGATTGTTCCCAGGTTCG ACGACTGGCAGCAATTTACCGCTTGCATAGTGGGACCCAAGGTTCTGGCAAGAAAAGCTTTGTAACAGTGTCAAGAACACAGCACACATGCATGCCATCA GCTAGTGATAAACTCCGTCTAGAAAAGCTGATAGGGGCTGGCGATGACAATGCTGATTTAGCTGTTAATGAAGGCCCAAGAACAAAATCAGCTAGTGCAG ACAGAAATAGGAAGAAGAAAAGCGCAAGGGGGAGTGGTGGGAGAAATGGTTTATATGCTAGTGGTGGGAGAAATGGTTTATATGCTAATCAACCAGTGTC ATTTGTATCAAGTGGAGTAATGCAATCTGGAGACGTTGAGACCATAACAGTGGATTCTCGAGAGATAAACGAAACTGGTGAAAAAAAGGATGCCACAAGC TCATCGAAGTTTGGTGCATTTGAGGTGCACACTAAAGGATTTGGATCTAAGATGATGGCAAAGATGGGATTTATAGAAGGTGGAGGGTTGGGAAAGGATG GTCAAGGTATGGCACAACCCGTTGAAGTGACCCAGCGGCCTAAATCTCTTGGTTTGGGTGTTGACTTCTCCGACATCAGTGTTGACTCGGTGAAGAATAA ACCTCAAAGCAGTAGAACTGGAACGTCTGGAAAACATAGTAAAACTGAAAACCTAGGAGCTTTTGAAAAGCACACCAAAGGATTTGGATCCAAGATAATG GCGAAGATGGGTTTTGTTGAAGGCATGGGCCTGGGCAAAGATTCCCAAGGTATTGTCAACCCTATAGTTGCTGTTAAGCGTCCAAAAGCTCGGGGGTTGG GTGCCAAAAGTTAG
AA sequence Show only first row Show all	>Potri.018G113600.1 pacid=42800714 polypeptide=Potri.018G113600.1.p locus=Potri.018G113600 ID=Potri.018G113600.1.v4.1 annot-version=v4.1 MAGGGKRRPNHSNENRNNQNNNRNAKTDSGGGGSSRRRSKSIRNSLFIEGGLLEDWSPSHSGRSVNVNSNSKWVSKPGNSSQGKVGSSSKNGPRKSYGNA FGYSYASSELQEGVGRDMDESQPIVVVDSKETEIVACLDETPTSKPYNLNSTYNYSSDFLLGESSHKGLGFCEELEATTGAELSSKQMEEEEKNGSSFDS SSSDKEMDADDTANCEAGEEMLTAAFSQKKNSAFLSIGSIKLFTQDISDGESDESLDESSESSEQGQRVVSQSNDSEDTSDCETDVDDEVVKDYLEGIGG SSSILDAKWLVENDLGDSDKDSSSSGCFDETLKKLSGIALEEASRSYGMKKPQSRKCHSLSARDVSPFLDDFMLVKDPRAISVKKKHVARLPQSWPLEAQ RSKNFRNFPGEKKKHRKEMIAVKRRQRMLARGIDMEKLNKKLEQIVLDEVDIFSFQPMHSRDCSQVRRLAAIYRLHSGTQGSGKKSFVTVSRTQHTCMPS ASDKLRLEKLIGAGDDNADLAVNEGPRTKSASADRNRKKKSARGSGGRNGLYASGGRNGLYANQPVSFVSSGVMQSGDVETITVDSREINETGEKKDATS SSKFGAFEVHTKGFGSKMMAKMGFIEGGGLGKDGQGMAQPVEVTQRPKSLGLGVDFSDISVDSVKNKPQSSRTGTSGKHSKTENLGAFEKHTKGFGSKIM AKMGFVEGMGLGKDSQGIVNPIVAVKRPKARGLGAKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	1.00	0.8953
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.018G064100 [exp]	3.16	0.8381
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	5.65	0.8339
AT1G78420			RING/U-box superfamily protein...		Potri.001G378000 [exp]	6.00	0.8112
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	6.48	0.8633
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	6.92	0.8452
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	9.79	0.8368
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	10.19	0.8418
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.006G134000 [exp]	14.07	0.8030
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	21.81	0.8124

Compare expression of checked genes

Potri.018G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.