Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25220 440 / 1e-154 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 430 / 5e-151 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 396 / 7e-138 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G62990 342 / 5e-118 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G70510 112 / 2e-28 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G62360 112 / 6e-28 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 111 / 2e-27 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G23380 108 / 8e-27 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G19700 56 / 2e-08 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75430 55 / 2e-08 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190000 [exp] 524 / 0 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G259400 [exp] 453 / 1e-159 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 425 / 9e-149 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.001G112200 [exp] 352 / 1e-121 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.005G014200 [exp] 125 / 2e-33 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.011G011101 [exp] 125 / 5e-33 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 125 / 6e-33 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.013G008600 [exp] 121 / 9e-32 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.004G004700 [exp] 114 / 8e-29 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006291 [exp] 453 / 2e-159 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 392 / 4e-136 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 380 / 2e-131 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 356 / 2e-124 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10024485 [exp] 302 / 2e-102 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10017824 [exp] 209 / 2e-67 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001195 [exp] 139 / 2e-40 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10029125 [exp] 111 / 8e-28 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 110 / 9e-28 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 94 / 3e-21 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [poplar] [flax] KNOX1 KNOX1 domain PF03791 [poplar] [flax] KNOX2 KNOX2 domain CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain
Representative CDS sequence Show only first row Show all	>Potri.018G114100.1 pacid=42800502 polypeptide=Potri.018G114100.1.p locus=Potri.018G114100 ID=Potri.018G114100.1.v4.1 annot-version=v4.1 ATGGCTTTTGAAGACCACCACCATATACCACAAGAAATGGCTTTTCAGCTACAACACCACCACCTCTCAGCCTCGTCTTCCACCGGTCCCCCATGGCTAA GCAACGCGGTCCTCCGTAGGAACGGCGACTTTATAACCATCGAAAAAACCGAAAACACCACCAACAATGGAAGTGAAGAGGAGTTGGTAGATTCTGTTAG TGATAACTGGGAGAGAGCTAAATGCAAAGCTGAGATATTAGGGCATCCTTTTTATGAACAATTATTGGCTGCACACGTGGCTTGTTTAAGGATTGCAACG CCAGTTGACCAGTTGGCTAGGATTGATACACAGTTGGCTCGGTCTCAAGATGTTATTGCTAAGTATTCTGGTGTTGGTTGTGGCCATGTTGTTGACGAGA AAGAACTTGATCAGTTCATGACACATTACGCTCTACTTCTCTGTTCCTTCAAAGACCAATTGCAGCAACATGTCCGTGTTCATGCTATGGAGGCAGTAAT GGCTTGCTGGGAACTTGAACAATCTCTACAAAGTTTGACTGGCGTATCTCCTGGGGAAGGCACTGGTGCAACTATGTCTGATGACGAAGATGACCAGGCA GAAAGTGATACCAACTTTAATGATGGAAACCTTGATGGGTTGGATACCATGGGATTTGGTCCTCTAGTCCCCACTGAAACTGAGAGGTCCTTGATGGAGC GTGTAAGGCAAGAATTGAAGCACGAGTTCAAACAGGATTACAAAGAGAAAATTGTGGACATTAGAGAGGAAATTTTACGTAAGAGAAGAGCAGGGAAACT GCCAGGTGATACCACGTCCCACTTAAAAGCTTGGTGGCAAACACATTCCAAGTGGCCGTACCCATCTGAGGAGGACAAAGCAAGATTGGTGCAGGAAACT GGGTTGCAGTTAAAGCAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGAACTGGCACAGCAGCCCTTCAGGATCTACCTCGAAGAGCAAACGAAAGA AGTAA
AA sequence Show only first row Show all	>Potri.018G114100.1 pacid=42800502 polypeptide=Potri.018G114100.1.p locus=Potri.018G114100 ID=Potri.018G114100.1.v4.1 annot-version=v4.1 MAFEDHHHIPQEMAFQLQHHHLSASSSTGPPWLSNAVLRRNGDFITIEKTENTTNNGSEEELVDSVSDNWERAKCKAEILGHPFYEQLLAAHVACLRIAT PVDQLARIDTQLARSQDVIAKYSGVGCGHVVDEKELDQFMTHYALLLCSFKDQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQA ESDTNFNDGNLDGLDTMGFGPLVPTETERSLMERVRQELKHEFKQDYKEKIVDIREEILRKRRAGKLPGDTTSHLKAWWQTHSKWPYPSEEDKARLVQET GLQLKQINNWFINQRKRNWHSSPSGSTSKSKRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	1.00	0.9684
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	2.00	0.9294
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	3.00	0.9226
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	4.47	0.9155
AT3G49055			unknown protein		Potri.015G146100 [exp]	4.47	0.9225
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	7.54	0.9425
AT2G14830			Regulator of Vps4 activity in ...		Potri.013G135700 [exp]	8.48	0.9268
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	9.38	0.9134
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	10.09	0.8961
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	10.24	0.9280

Compare expression of checked genes

Potri.018G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.