Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46920 647 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G24715 454 / 2e-138 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 452 / 3e-138 PB1 domain-containing protein tyrosine kinase (.1) AT5G57610 449 / 4e-137 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 450 / 2e-136 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 451 / 5e-136 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 447 / 2e-134 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 201 / 2e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 201 / 2e-53 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 190 / 1e-49 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190200 [exp] 2368 / 0 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 451 / 4e-137 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 450 / 1e-136 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 456 / 2e-136 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 450 / 4e-135 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 443 / 3e-134 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 445 / 8e-134 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 438 / 2e-132 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 434 / 4e-130 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019577 [exp] 1423 / 0 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 868 / 0 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 464 / 7e-148 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 445 / 2e-144 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 465 / 1e-142 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 445 / 2e-139 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 444 / 1e-134 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 362 / 1e-104 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 191 / 3e-50 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 190 / 2e-49 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G114300.3 pacid=42800910 polypeptide=Potri.018G114300.3.p locus=Potri.018G114300 ID=Potri.018G114300.3.v4.1 annot-version=v4.1 ATGGCTTTTGATCAGACCCCAACACCAAAAGATACAAGGCCATTAAACATAGCTAGAACCATACCTGAAGAGCCCCGCATTGTGGCTGCTATTGCTAGTG CTACTAGTAGTTCTGTCACTACACCAGTAACAGCTGGTAGAAAACATGAGTTTTTTGCCAGCCCAGAAGGTTCTATTCCTGTTATCTATCCGGCATCGGT GTCTGATGCTGGTTTTGTAGGTTTAGGATATGGGAATGCTTATTCCGGGGCTGCCCCGTGGGCCCCACTCATGCCGGTTCCCGTGTCGGTTGGGAGTATG AACGTGGGTGCAAATGGTTCTGGTGTTCCGTTTGGTTATAATCCTAATTTGGGGAACAGGATAGTTGGTAATGCTGTTGATCGTGCCGGAAATGATATGG TGTTGGGATCTGGTTCTTCACCCAATTTTGGGAATCGGGTTAATGTTAATGGGAGCATTGAGGCAGTAAATACGGGGCTGGGTTGTAATACCAATTTGGG GAGTCACGCTAGTGGTGGGGCTGACCATGGGAGTGAAGATGGTGGGGATGATTCAGTGTCGGGGAAGAAAGTGAAGTTTTTGTGTAGTTTTGGGGGGAAG ATTTTGCCAAGACCAAGTGATGGTACGTTGAGATATGCTGGAGGGCAAACAAGGATTATTAGTGTGAGGAGAGATGTGAGCATTAATGAGCTGCAGCGGA AGATGATGGATACATATCAGCAGCCTGTTGTTATTAAATACCAGCTTCCTGATGAGGACCTTGATGCATTGGTGTCTGTTTCATGTGCTGATGATCTTGA TAATATGATGGAGGAATATGAGAAGTTGCTTGAGAGGTCTTCAGATGGGTCAGCTAAGTTAAGGGTGTTTTTGTTTTCGGATTCACAGCTCGATACTTCT GGTTCAGTCCAATTTGGAGATTTACATGATAGCGGGCAGAGATATTTTGATGCAGTAAATGGGGTTGTGGATGGCGGTGGTCGTATCACTAGGAAGGGGA GTATGGCGAGTGTAACTTCAACGCAAAACTCTGATTTTAGTGGGACTGAGGCTGTTGAGAGCTCAGGTCCTGGTCAAGGGGATGTGACTTGGTCACCATC TACCAGCCTGTTATCCCCTGGGGATAATTTGGATGCTTCTCATGATTCTACTCCAAAACTAGTCTTTGCAGATACCAACCCCCCAGCTTATGCAGGTGTA TCTGCAGTTCCATTGGGGATTCCATTGGCTAAGTCCGGTCCTCCGCAGACTTCATGTTCTCAGCCTGAGGTTGAATTTGAGAGGTCCGTTCCTATTACTG CACAGCCGCAGCATAGGGTCCATGATTTCCAGCAAGTTGGGTCAGGCATTCTACCACATGCACCTCAATCGCGGGCTTATGTAGATCCTCGTCAAGAAAA TATGAATCAGGCAGATTATAGGCATGTTCCTCCCCTCATGGGTTTTCCAAATAATCATGTGCTTGGAACTCCGGGGCCCATATTCACCCAACAGCATTTT CATGAGAGTAATGCAGGTGCTACTTCACTTCAATATGTTCCTGCAGTGCATATGACTATGACACCCTCAGGTTCTCATATGGCTATAAGGCCAAATGTGG TTCAACCATTGATTCAACCCCAACAAACTCGCTTGGAGCACTATCCTGAAGAAAATGCATTTGGAACAAGGATTGTTCAGGTTCCTGTTGACTCAAGCTA CAATGCATATCGGGCTCAACTTCCTCCTGCAGTTGTTGGAGGCTATGGCTGGACACAAGTTCCTCAGCCAGAGCCTGTTGTCTACTCTGATGGGTCAGTG TCTCATCAACAGGTACTTTTCCCTGAGAAAATTCCAAGAATGGAGGACTGTTATATGTGTCAGAAAGCACTGCCTCATGCACATTCAGATCCTTTGGTAC CGGCCCCAAGAGAATCTGGAATGAGCTATTCAAACTCACTTAATCATAGTCTTCGTTTAGAAGATACCATGAAAGCCCCCCCTATGAACAGGGTTATGAT AACTGGTGCCTCGGGAGAACGCATTATGGAACAAGGTGCTGGTGCCCAACCTGCAGTTCATAGTCATATCGGAACACCGCAGTCGGAAGCAATTGTGTCC TCTCAGAATCTTGAGGCACCTCATGAAAATGAGAGAACTTTCTTGAAAACTGACAATTCTGGTCAACCTAAGATTTCAGCTCCCTATGGCATGATAGGTT TACCAGGTGATGTACAGTCTCCTTATGGCATGTTCGCAGGTGGAATTCCTGCGTCTCGCATGGAAGATTGTATCCAGCAGCATTCAGTGTCAATGCAACC ACAGGTTTTACTGAGTAAACCTGCTAACAGTGATGCCCCTCATGCTGTTGCTGTACCTATTCAAGCTTCTGAACACCTAGTTCAAGAATCTCCAAAAGAA TACTATGGCAAGCTTCCTGGTGTTGTTTCCCAAGAAGATGCTCTAGACTCTTACATATCTTGTGAGCAGCTGAGACCAGTTGATGGGATGATGGAAGCTC TCCATATACGCCCCCCTGAAATTAATGTTAACAATTATCAGAAAAAGTCACCTGTTGATAAATTTAAAAAGGAAGAAATCTTGGATCATAAAACCCAGAA AATTGCTGGGAGGGAGGTGCTTCTAGATAATACTTTTAACAAACCACAGGTGGTTCTTGAATCAAATCATATTAAGCAGTTTGAAATGTTGCCTGCTTCT ACAGAGGTTTCTTACTTGCATATTTCTCAACCAATGGAATTACATGAGGTTGCACAACCACCTATTTTGGGTAATAAAGCATCACACCCGCAGCCCAAGA TTGGAGTTCCTGCCTTGGATTCTGCTGAAGTTAGTTATGGAATCCCTGCATTCTCTGGTGTTGAGCCTGCCTTTGTAAATGACAGAATCCCACCTTTTGC TGAATGGAAGAATGATTCACAACTGCATTCAAAGGTTGTCCCCAGCGACGTGGAAGCTTTATCATCAACTGGTAATATGCCATCTTCCCTATCGCCATCT GGTGGAGTTGGCAATGCTCAGGACTTTTCAAACTCACTCTTCAGCAGCCAGGATCCTTGGAAATCAAGGCATGATAATCAGTTTCCTCCACCTAGACCCA ACAAGATTGCAACAAAAAAAGAAGCCTTTACTACTAGGGACCCTTTCATTGAGAACCATTCTGGTGAGGTGGACTTAATCACAGGTGTGCTGTTGGAGGA TGGAGTTTCCAAGCCACTGAGCAATTCAAACAAGGATTTAGAACGTGCTCAATCATCCAAAGGTTCAGCAGAGGAACTCATCAGGCAAGAACTCAAGGCT GTAGCTGAGGGTGTAGCTGCTTCTGTTTTCCAGTCAGATACTTCTAATCCTGAACAAAACGTGTCAGAAAGAAATGAACCTGCTTATGAACCAAATCAAG AAAAAGAAGATTCAAATGAAAGTGTAGAAATGCAGCACAAAGCTAAACTTGAGGACATGAAGAACAAACTGCCTGATAAGGTGAATTTTGGTTTTCCTGT ATCGGAAGGCCGTGGTCGCTTGCAGATTATAAAGAACAGTGACCTTGAAGAGCTGCAGGAATTGGGTTCTGGCACCTTTGGCACTGTTTATCATGGGAAG TGGAGGGGTACTGATGTAGCAATCAAACGAATCAATGATAGGTGTTTCGCTGGGAAACCTTCTGAACAAGAACGCATGAGAGATGACTTCTGGAACGAGG CAATTAAGCTTGCTGATCTGCACCATCCAAATGTGGTTGCTTTTTATGGTGTTGTTGATGATGGCCTTGGAGGTTCTGTGGCAACAGTGACAGAGTTCAT GGTTAATGGTTCTTTAAGAAATGCTTTGCAGAAAAATGAGAGCAGGAACCTTGACAAGCGTAAGCGTCTCTTGATTGCCATGGATGTGGCCTTTGGAATG GGATACTTGCATGGAAAGAATGTAGTGCACTTCGATCTGAAGAGTGACAATTTACTTGTTAATCTTCGAGATCCTCACCGGCCAATATGCAAGGTCGGTG ATTTGGGCCTGTCTAAGGTGAAATGCCAAACACTTATCTCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCGGAGCTTCTGAATGGAAGCAGTAG TCTTGTCTCTGAAAAGGTCGACGTGTTCTCATTTGGTATCGTGTTGTGGGAACTTCTGACTGGGGAAGAACCATACTCCGACTTGCACTACGGGGCTATT ATAGGTGGTATTGTGAGCAATACCTTGCGGCCACCAGTGCCAGAGACTTGTGACCCAGAGTGGAGATCATTGATGGAGAGATGCTGGTCTTCTGAGCCAT CAGACAGACCAAACTTCACTGAAATTGCAAATGATTTGCGTGCGATGGTAGCAAAGATTCCTCCCAGAGGGCAAAACCCATCACAGTAG
AA sequence Show only first row Show all	>Potri.018G114300.3 pacid=42800910 polypeptide=Potri.018G114300.3.p locus=Potri.018G114300 ID=Potri.018G114300.3.v4.1 annot-version=v4.1 MAFDQTPTPKDTRPLNIARTIPEEPRIVAAIASATSSSVTTPVTAGRKHEFFASPEGSIPVIYPASVSDAGFVGLGYGNAYSGAAPWAPLMPVPVSVGSM NVGANGSGVPFGYNPNLGNRIVGNAVDRAGNDMVLGSGSSPNFGNRVNVNGSIEAVNTGLGCNTNLGSHASGGADHGSEDGGDDSVSGKKVKFLCSFGGK ILPRPSDGTLRYAGGQTRIISVRRDVSINELQRKMMDTYQQPVVIKYQLPDEDLDALVSVSCADDLDNMMEEYEKLLERSSDGSAKLRVFLFSDSQLDTS GSVQFGDLHDSGQRYFDAVNGVVDGGGRITRKGSMASVTSTQNSDFSGTEAVESSGPGQGDVTWSPSTSLLSPGDNLDASHDSTPKLVFADTNPPAYAGV SAVPLGIPLAKSGPPQTSCSQPEVEFERSVPITAQPQHRVHDFQQVGSGILPHAPQSRAYVDPRQENMNQADYRHVPPLMGFPNNHVLGTPGPIFTQQHF HESNAGATSLQYVPAVHMTMTPSGSHMAIRPNVVQPLIQPQQTRLEHYPEENAFGTRIVQVPVDSSYNAYRAQLPPAVVGGYGWTQVPQPEPVVYSDGSV SHQQVLFPEKIPRMEDCYMCQKALPHAHSDPLVPAPRESGMSYSNSLNHSLRLEDTMKAPPMNRVMITGASGERIMEQGAGAQPAVHSHIGTPQSEAIVS SQNLEAPHENERTFLKTDNSGQPKISAPYGMIGLPGDVQSPYGMFAGGIPASRMEDCIQQHSVSMQPQVLLSKPANSDAPHAVAVPIQASEHLVQESPKE YYGKLPGVVSQEDALDSYISCEQLRPVDGMMEALHIRPPEINVNNYQKKSPVDKFKKEEILDHKTQKIAGREVLLDNTFNKPQVVLESNHIKQFEMLPAS TEVSYLHISQPMELHEVAQPPILGNKASHPQPKIGVPALDSAEVSYGIPAFSGVEPAFVNDRIPPFAEWKNDSQLHSKVVPSDVEALSSTGNMPSSLSPS GGVGNAQDFSNSLFSSQDPWKSRHDNQFPPPRPNKIATKKEAFTTRDPFIENHSGEVDLITGVLLEDGVSKPLSNSNKDLERAQSSKGSAEELIRQELKA VAEGVAASVFQSDTSNPEQNVSERNEPAYEPNQEKEDSNESVEMQHKAKLEDMKNKLPDKVNFGFPVSEGRGRLQIIKNSDLEELQELGSGTFGTVYHGK WRGTDVAIKRINDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVDDGLGGSVATVTEFMVNGSLRNALQKNESRNLDKRKRLLIAMDVAFGM GYLHGKNVVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVLWELLTGEEPYSDLHYGAI IGGIVSNTLRPPVPETCDPEWRSLMERCWSSEPSDRPNFTEIANDLRAMVAKIPPRGQNPSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46920			Protein kinase superfamily pro...		Potri.018G114300 [exp]	0	1
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.005G172900 [exp]	1.00	0.7822
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102900 [exp]	16.30	0.6701
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.011G136300 [exp]	25.45	0.7245
AT3G51750			unknown protein		Potri.006G103600 [exp]	27.11	0.6149
					Potri.019G014316 [exp]	40.06	0.6953
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	51.17	0.6810
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017450 [exp]	53.27	0.6500
AT1G78110			unknown protein		Potri.002G094700 [exp]	54.49	0.6923
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.013G007700 [exp]	57.34	0.6978
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G103000 [exp]	59.32	0.6692

Compare expression of checked genes

Potri.018G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.