Plant FIBer expression Database

Potri.018G114401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35090 44 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G114401.1 pacid=42802202 polypeptide=Potri.018G114401.1.p locus=Potri.018G114401 ID=Potri.018G114401.1.v4.1 annot-version=v4.1
ATGGCATCAATAAGCGAACCTAATTCTCCGTCCTCTTCATCTCTGAAACACAAGCTGAAATCTACATTATGTTCCTTCCAAAAACACAATCACCACCACC
ATCATCATGTCACATTTAATAACTCGGAGAAACATATTCATCAGAAGCATGATCGTTATGCGGTGCAAGAGGCGATGAATGCTGAATCCCATGGGGATAT
TAGGGGTAATAAGACGAGTTATTTGTCGTGTATAGGGAAGCATGGACATAGACATGGTCGTGGGCATAGGAGACGTCATACTATGTCAGCGAATTTTCAC
TATGATGCTACGAGTTATGCCTTGAATTTTGATGAAGGTAAAGGAAATGATGATGGTACTCGTAGTTGTGATTCTCGTTTGATGGATTTTTCTTCAAGGT
TGCCTCCTTCACCAACTAGAGATATTGATATATATATCTACGGGTAG
AA sequence
>Potri.018G114401.1 pacid=42802202 polypeptide=Potri.018G114401.1.p locus=Potri.018G114401 ID=Potri.018G114401.1.v4.1 annot-version=v4.1
MASISEPNSPSSSSLKHKLKSTLCSFQKHNHHHHHHVTFNNSEKHIHQKHDRYAVQEAMNAESHGDIRGNKTSYLSCIGKHGHRHGRGHRRRHTMSANFH
YDATSYALNFDEGKGNDDGTRSCDSRLMDFSSRLPPSPTRDIDIYIYG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G35090 unknown protein Potri.018G114401
[exp]
0 1
AT5G04980 DNAse I-like superfamily prote... Potri.008G011000
[exp]
1.73 0.9077
Potri.007G005400
[exp]
3.00 0.8481
AT1G10380 Putative membrane lipoprotein ... Potri.010G040500
[exp]
3.16 0.8951
Potri.013G113800
[exp]
3.46 0.8427
AT1G10380 Putative membrane lipoprotein ... Potri.007G094800
[exp]
6.24 0.8924
Potri.004G226200
[exp]
11.18 0.8590
AT5G54855 Pollen Ole e 1 allergen and ex... Potri.011G137100
[exp]
12.12 0.8299
AT1G32583 unknown protein Potri.015G101000
[exp]
13.41 0.8153
Potri.002G250900
[exp]
15.49 0.8720
Potri.011G165300
[exp]
16.52 0.8393

Potri.018G114401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.